search

mandricigor / imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
https://mandricigor.github.io/imrep/
28 stars 14 forks source link

DNA seq of CDR3 #21

Open smangul1 opened 7 years ago

smangul1 commented 7 years ago

Do you think we can report the DNA Seq of CDR3 And maybe map the reads onto those to better quantify the CDR3s? What do you think?

mandricigor commented 7 years ago

You mean at the end to run an aligner to infer the DNA sequence?...

smangul1 commented 7 years ago

as we can offer this option. Maybe we can find more CDR3 reads? Also, we can concatenate corresponding V and J genes and map. What do you think?