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mandricigor / imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
https://mandricigor.github.io/imrep/
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full_cdr3.txt #4

Closed smangul1 closed 7 years ago

smangul1 commented 7 years ago

does it contain the CDR3 assembled from 2 reads in by the second step of imrep? if yes, do we flag for it to distinguish reads overlapping both V and J?

mandricigor commented 7 years ago

No, we don't do. Should we have such a flag in full_cdr3.txt?

smangul1 commented 7 years ago

i think it will be great to have it

smangul1 commented 7 years ago

Any updates here?

mandricigor commented 7 years ago

Do we really need it? Many of the CDR3s that are assembled from one single reads also are assembled overlapping ones. So most of the times we will have both of them to have place.

smangul1 commented 7 years ago

agree! we don't need it