extract_mapped() function takes 3 arguments when specifying --digGold

mandricigor / imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

https://mandricigor.github.io/imrep/

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Open alexpan82 opened 4 years ago

alexpan82 commented 4 years ago

Hello!

I think I may have found a potential bug in imrep.py while running it using the --digGold -a options:

File "/users/tools/imrep/imrep.py", line 1022, in extract_mapped(i,file,k) TypeError: extract_mapped() takes exactly 2 arguments (3 given)

Line 67 confirms that the function only takes 2 arguments: def extract_mapped(tag,file):

Lines 1021 & 1022 nested in the conditional elif args.is_digGold: k=0 extract_mapped(i,file,k)

Thank you, Alex