Open vihaj opened 3 years ago
When running ImRep with a BAM, I get the error saying that BAM file and index file are out of sync, even though the index file that is used is generated for the BAM file.
Attached is a screenshot of the issue for reference. Any help or any pointer on this is appreciated !
I solved this problem by adding an option "--chrFormat2" to the command.
When running ImRep with a BAM, I get the error saying that BAM file and index file are out of sync, even though the index file that is used is generated for the BAM file.
Attached is a screenshot of the issue for reference. Any help or any pointer on this is appreciated !