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mandricigor / imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
https://mandricigor.github.io/imrep/
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ImRep complaining about index file being older than the BAM file #42

Open vihaj opened 3 years ago

vihaj commented 3 years ago

When running ImRep with a BAM, I get the error saying that BAM file and index file are out of sync, even though the index file that is used is generated for the BAM file.

Attached is a screenshot of the issue for reference. Any help or any pointer on this is appreciated !

vihaj commented 3 years ago

When running ImRep with a BAM, I get the error saying that BAM file and index file are out of sync, even though the index file that is used is generated for the BAM file.

Attached is a screenshot of the issue for reference. Any help or any pointer on this is appreciated !

IMG_20201217_213557

DaeunKim115 commented 3 years ago

I solved this problem by adding an option "--chrFormat2" to the command.