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mani2012 / BatchQC

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
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pca plot not loaded---urgent please #17

Closed garimaloh closed 4 years ago

garimaloh commented 4 years ago
Capture

Unable to generate plot. The table is loaded. Other data is present in Summary, Table and Explained variation tab.

mani2012 commented 4 years ago

Hi,

Thank you for contacting. This is a known issue with ggvis. (https://github.com/rstudio/ggvis/issues/483). I am hoping that the maintainers of ggvis will fix this soon. Fortunately, there is an easy fix for now so that you can get back this plot working in no time. All you do is the following: You will need to downgrade the dplyr package to version 0.8.3. Locate your R repository location: For example in Windows: \R\win-library\4.0 Delete the folder dplyr or Move the folder dplyr to some other location for now.

Install the package devtools, if you don’t have it already and run the following. require(devtools) install_version("dplyr", version = "0.8.3")

Please let me know whether your plot works after downgrading the dplyr to version 0.8.3.

Thanks, Mani

From: Garima notifications@github.com Sent: Saturday, July 18, 2020 1:30 AM To: mani2012/BatchQC BatchQC@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [mani2012/BatchQC] pca plot not loaded (#17)

[Capture]https://user-images.githubusercontent.com/48873678/87845504-056e8480-c896-11ea-9110-8e04b817d196.PNG

Unable to generate plot. The table is loaded. Other data is present in Summary, Table and Explained variation tab.

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garimaloh commented 4 years ago

Thank you so much. Yes, I have to downgrade the following and it worked. ggvis_0.4.5

dplyr_0.8.3 shiny_1.4.0.2

htmltools_0.4.0

https://github.com/rstudio/ggvis/issues/483#issuecomment-652257242