mani2012 / BatchQC

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
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Surrogate Variable Analysis #2

Closed claireruberman closed 9 years ago

claireruberman commented 9 years ago

Add functions from the ‘sva’ package by Leek et. al to determine the number of surrogate variables, estimate the data having removed batch effect, and estimate the surrogate variables to include in the analysis