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mani2012 / BatchQC

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
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Including combat_seq #22

Open cmatKhan opened 3 years ago

cmatKhan commented 3 years ago

Are there any plans to include combat_seq in BatchQC?

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7518324/

WangKang-Leo commented 1 year ago

Same question from me, it would be great if the BatchQC could integrate combat-seq

wevanjohnson commented 1 year ago

Yes! Hopefully very soon! On May 24, 2023, at 7:57 AM, WangKang-Leo @.***> wrote: Same question from me, it would be great if the BatchQC could integrate combat-seq

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WangKang-Leo commented 1 year ago

Yes! Hopefully very soon! On May 24, 2023, at 7:57 AM, WangKang-Leo @.> wrote: Same question from me, it would be great if the BatchQC could integrate combat-seq —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you are subscribed to this thread.Message ID: @.>

I am just wondering whether we could use count data (from RNA-seq) as input? Because combat wrapped in batchQC only receive normalized data matrix......