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manodeep / Corrfunc

⚡️⚡️⚡️Blazing fast correlation functions on the CPU.
https://corrfunc.readthedocs.io
MIT License
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`setup_requires` deprecation -- migrate to `pyproject.toml` #263

Open lgarrison opened 2 years ago

lgarrison commented 2 years ago

setup_requires is deprecated; we'll need to migrate to PEP 517/pyproject.toml.

There's a related failure in the wheel build: if numpy is not installed when pip install corrfunc is run, then the Python CFLAGS aren't found. In the full log below, it first tries to build a wheel, which fails, and then it succeeds with the legacy setup.py install method. I think we can probably fix this as part of the PEP 517 migration.

(base) lgarriso@cori14:/$ conda create -n cf-inst 'python=3.9'
(base) lgarriso@cori14:/$ conda activate cf-inst
(cf-inst) lgarriso@cori14:/$ pip install --verbose corrfunc
Using pip 21.3.1 from /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/pip (python 3.9)
Collecting corrfunc
  Downloading Corrfunc-2.4.0.tar.gz (26.1 MB)
     |████████████████████████████████| 26.1 MB 5.7 MB/s            
  Running command python setup.py egg_info
  /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/__init__.py:148: SetuptoolsDeprecationWarning: setup_requires is deprecated. Supply build dependencies using PEP 517 pyproject.toml build-requires.
```console (base) lgarriso@cori14:/$ conda create -n cf-inst 'python=3.9' (base) lgarriso@cori14:/$ conda activate cf-inst (cf-inst) lgarriso@cori14:/$ pip install --verbose corrfunc Using pip 21.3.1 from /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/pip (python 3.9) Collecting corrfunc Downloading Corrfunc-2.4.0.tar.gz (26.1 MB) |████████████████████████████████| 26.1 MB 5.7 MB/s Running command python setup.py egg_info /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/__init__.py:148: SetuptoolsDeprecationWarning: setup_requires is deprecated. Supply build dependencies using PEP 517 pyproject.toml build-requires. warnings.warn( running egg_info creating /tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info writing /tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/PKG-INFO writing dependency_links to /tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/dependency_links.txt writing requirements to /tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/requires.txt writing top-level names to /tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/top_level.txt writing manifest file '/tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/SOURCES.txt' reading manifest file '/tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'INSTALL' warning: no files found matching 'docs' warning: no previously-included files found matching 'theory/tests/data/random_Zspace.ff' warning: no previously-included files found matching 'mocks/tests/data/Mr19_randoms_northonly.rdcz.ff' adding license file 'LICENSE' writing manifest file '/tmp/pip-pip-egg-info-m_qefpmi/Corrfunc.egg-info/SOURCES.txt' Preparing metadata (setup.py) ... done Collecting numpy>=1.7 Downloading numpy-1.21.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) |████████████████████████████████| 15.7 MB 80.2 MB/s Requirement already satisfied: future in /global/u1/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages (from corrfunc) (0.18.2) Requirement already satisfied: wurlitzer in /global/u1/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages (from corrfunc) (3.0.2) Building wheels for collected packages: corrfunc Running command /global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-70yk8n2a /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/__init__.py:148: SetuptoolsDeprecationWarning: setup_requires is deprecated. Supply build dependencies using PEP 517 pyproject.toml build-requires. warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/utils.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/tests.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/io.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/call_correlation_functions_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/call_correlation_functions.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/__init__.py -> build/lib.linux-x86_64-3.9/Corrfunc creating build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/xi.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/wp.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/vpf.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/__init__.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/DDsmu.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/DDrppi.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/DD.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory creating build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/vpf_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/__init__.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/DDtheta_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/DDsmu_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/DDrppi_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks running egg_info writing Corrfunc.egg-info/PKG-INFO writing dependency_links to Corrfunc.egg-info/dependency_links.txt writing requirements to Corrfunc.egg-info/requires.txt writing top-level names to Corrfunc.egg-info/top_level.txt reading manifest file 'Corrfunc.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'INSTALL' warning: no files found matching 'docs' warning: no previously-included files found matching 'theory/tests/data/random_Zspace.ff' warning: no previously-included files found matching 'mocks/tests/data/Mr19_randoms_northonly.rdcz.ff' adding license file 'LICENSE' writing manifest file 'Corrfunc.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-3.9/mocks creating build/lib.linux-x86_64-3.9/mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock.DD -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock.DR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_DDsmu.DR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_DDsmu.RR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_vpf -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_wtheta.DD -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_wtheta.DR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_randoms_vpf -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/angular_bins -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/bins -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests creating build/lib.linux-x86_64-3.9/mocks/tests/data copying Corrfunc/../mocks/tests/data/Mr19_centers_xyz_forVPF_rmax_10Mpc.txt -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests/data copying Corrfunc/../mocks/tests/data/Mr19_mock_northonly.rdcz.dat -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests/data copying Corrfunc/../mocks/tests/data/Mr19_mock_northonly.rdcz.ff -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests/data creating build/lib.linux-x86_64-3.9/theory creating build/lib.linux-x86_64-3.9/theory/tests copying Corrfunc/../theory/tests/Mr19_DD_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DD_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDrppi_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDrppi_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDsmu_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDsmu_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_vpf_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_wp -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_xi -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/bins -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_DD_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_DR_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_DR_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_RR_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests creating build/lib.linux-x86_64-3.9/theory/tests/data copying Corrfunc/../theory/tests/data/cmassmock_Zspace.ff -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests/data copying Corrfunc/../theory/tests/data/gals_Mr19.ff -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests/data running build_ext Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'numpy' /bin/sh: line 0: [: too many arguments ../../common.mk:428: Found NUMPY version .. but minimum required numpy is 1.7 -------COMPILE SETTINGS------------ MAKE = ["make"] CC = ["gcc"] OPT = ["-DPERIODIC -DENABLE_MIN_SEP_OPT -DCOPY_PARTICLES -DUSE_OMP"] CFLAGS = [" -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs "] CLINK = [" -lrt -fopenmp -lm"] PYTHON = ["/global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9"] GSL_CFLAGS = ["-I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include"] GSL_LINK = ["-L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib"] PYTHON_CFLAGS = [""] -------END OF COMPILE SETTINGS------------ make -C ../../theory/DD libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DD' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/weight_defs.h.src >> ../../utils/weight_defs_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_impl.h.src >> countpairs_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/weight_defs.h.src >> ../../utils/weight_defs_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_impl.h.src >> countpairs_impl_float.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs.c -o countpairs.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_kernels.c.src >> countpairs_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_kernels.c.src >> countpairs_kernels_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/gridlink_impl.h.src >> ../../utils/gridlink_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/gridlink_impl.h.src >> ../../utils/gridlink_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/gridlink_utils.h.src >> ../../utils/gridlink_utils_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/gridlink_utils.h.src >> ../../utils/gridlink_utils_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/cellarray.h.src >> ../../utils/cellarray_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/cellarray.h.src >> ../../utils/cellarray_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/cell_pair.h.src >> ../../utils/cell_pair_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/cell_pair.h.src >> ../../utils/cell_pair_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/weight_functions.h.src >> ../../utils/weight_functions_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/weight_functions.h.src >> ../../utils/weight_functions_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_impl.c.src >> countpairs_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_impl_double.c -o countpairs_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_impl.c.src >> countpairs_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_impl_float.c -o countpairs_impl_float.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/gridlink_impl.c.src >> ../../utils/gridlink_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/gridlink_impl_double.c -o ../../utils/gridlink_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/gridlink_impl.c.src >> ../../utils/gridlink_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/gridlink_impl_float.c -o ../../utils/gridlink_impl_float.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/gridlink_utils.c.src >> ../../utils/gridlink_utils_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/gridlink_utils_double.c -o ../../utils/gridlink_utils_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/gridlink_utils.c.src >> ../../utils/gridlink_utils_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/gridlink_utils_float.c -o ../../utils/gridlink_utils_float.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/utils.c -o ../../utils/utils.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/progressbar.c -o ../../utils/progressbar.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/cpu_features.c -o ../../utils/cpu_features.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/avx512_calls.c -o ../../utils/avx512_calls.o ar rcs libcountpairs.a countpairs.o countpairs_impl_double.o countpairs_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_double.o ../../utils/gridlink_utils_float.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DD' make -C ../../theory/DDrppi libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDrppi' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_rp_pi_impl.h.src >> countpairs_rp_pi_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_rp_pi_impl.h.src >> countpairs_rp_pi_impl_float.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_rp_pi.c -o countpairs_rp_pi.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_rp_pi_kernels.c.src >> countpairs_rp_pi_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_rp_pi_kernels.c.src >> countpairs_rp_pi_kernels_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_rp_pi_impl.c.src >> countpairs_rp_pi_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_rp_pi_impl_double.c -o countpairs_rp_pi_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_rp_pi_impl.c.src >> countpairs_rp_pi_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_rp_pi_impl_float.c -o countpairs_rp_pi_impl_float.o ar rcs libcountpairs_rp_pi.a countpairs_rp_pi.o countpairs_rp_pi_impl_double.o countpairs_rp_pi_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_double.o ../../utils/gridlink_utils_float.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDrppi' make -C ../../theory/wp libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/wp' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_wp_impl.h.src >> countpairs_wp_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_wp_impl.h.src >> countpairs_wp_impl_float.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_wp.c -o countpairs_wp.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" wp_kernels.c.src >> wp_kernels_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" wp_kernels.c.src >> wp_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_wp_impl.c.src >> countpairs_wp_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_wp_impl_double.c -o countpairs_wp_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_wp_impl.c.src >> countpairs_wp_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_wp_impl_float.c -o countpairs_wp_impl_float.o ar rcs libcountpairs_wp.a countpairs_wp.o countpairs_wp_impl_double.o countpairs_wp_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/wp' make -C ../../theory/xi libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/xi' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_xi_impl.h.src >> countpairs_xi_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_xi_impl.h.src >> countpairs_xi_impl_float.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_xi.c -o countpairs_xi.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" xi_kernels.c.src >> xi_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" xi_kernels.c.src >> xi_kernels_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_xi_impl.c.src >> countpairs_xi_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_xi_impl_double.c -o countpairs_xi_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_xi_impl.c.src >> countpairs_xi_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_xi_impl_float.c -o countpairs_xi_impl_float.o ar rcs libcountpairs_xi.a countpairs_xi.o countpairs_xi_impl_double.o countpairs_xi_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/xi' make -C ../../theory/DDsmu libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDsmu' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_s_mu_impl.h.src >> countpairs_s_mu_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_s_mu_impl.h.src >> countpairs_s_mu_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_s_mu_kernels.c.src >> countpairs_s_mu_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_s_mu_kernels.c.src >> countpairs_s_mu_kernels_double.c gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_s_mu.c -o countpairs_s_mu.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_s_mu_impl.c.src >> countpairs_s_mu_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_s_mu_impl_double.c -o countpairs_s_mu_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_s_mu_impl.c.src >> countpairs_s_mu_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_s_mu_impl_float.c -o countpairs_s_mu_impl_float.o ar rcs libcountpairs_s_mu.a countpairs_s_mu.o countpairs_s_mu_impl_double.o countpairs_s_mu_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDsmu' make -C ../../theory/vpf libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/vpf' sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countspheres_impl.h.src >> countspheres_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countspheres_impl.h.src >> countspheres_impl_double.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres.c -o countspheres.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countspheres_impl.c.src >> countspheres_impl_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" vpf_kernels.c.src >> vpf_kernels_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres_impl_double.c -o countspheres_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countspheres_impl.c.src >> countspheres_impl_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" vpf_kernels.c.src >> vpf_kernels_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres_impl_float.c -o countspheres_impl_float.o ar rcs libcountspheres.a countspheres.o countspheres_impl_double.o countspheres_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/vpf' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../theory/DD -I../../theory/DDrppi -I../../theory/wp -I../../theory/xi -I../../theory/DDsmu -I../../theory/vpf -I../../io -I../../utils _countpairs.c -c -o _countpairs.o _countpairs.c:11:10: fatal error: Python.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. make: *** [Makefile:49: _countpairs.o] Error 1 Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py", line 577, in setup_packages() File "/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py", line 569, in setup_packages setup(**metadata) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/__init__.py", line 159, in setup return distutils.core.setup(**attrs) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 299, in run self.run_command('build') File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/command/build.py", line 135, in run self.run_command(cmd_name) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 79, in run _build_ext.run(self) File "/global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/distutils/command/build_ext.py", line 340, in run self.build_extensions() File "/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py", line 357, in build_extensions run_command(command) File "/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py", line 70, in run_command raise RuntimeError(msg) RuntimeError: command = cd theory/python_bindings && make failed with stdout = None stderr = None status 2 Building wheel for corrfunc (setup.py) ... error ERROR: Failed building wheel for corrfunc Running setup.py clean for corrfunc Running command /global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/__init__.py:148: SetuptoolsDeprecationWarning: setup_requires is deprecated. Supply build dependencies using PEP 517 pyproject.toml build-requires. warnings.warn( running clean removing 'build/lib.linux-x86_64-3.9' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it removing 'build' Failed to build corrfunc Installing collected packages: numpy, corrfunc changing mode of /global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/f2py to 775 changing mode of /global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/f2py3 to 775 changing mode of /global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/f2py3.9 to 775 Running command /global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-b8bod4yh/install-record.txt --single-version-externally-managed --compile --install-headers /global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9/corrfunc mkdir -p lib mkdir -p bin mkdir -p include make -C theory libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory' -------COMPILE SETTINGS------------ MAKE = ["make"] CC = ["gcc"] OPT = ["-DPERIODIC -DENABLE_MIN_SEP_OPT -DCOPY_PARTICLES -DUSE_OMP"] CFLAGS = [" -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs "] CLINK = [" -lrt -fopenmp -lm"] PYTHON = ["/global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9"] GSL_CFLAGS = ["-I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include"] GSL_LINK = ["-L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib"] PYTHON_CFLAGS = ["-isystem/global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9 -isystem /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/numpy/core/include/numpy/"] -------END OF COMPILE SETTINGS------------ for dir in DD DDrppi DDsmu wp xi vpf examples python_bindings; do \ make -C $dir lib; \ done make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DD' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs.c -o countpairs.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/utils.c -o ../../utils/utils.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/progressbar.c -o ../../utils/progressbar.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/cpu_features.c -o ../../utils/cpu_features.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c ../../utils/avx512_calls.c -o ../../utils/avx512_calls.o ar rcs libcountpairs.a countpairs.o countpairs_impl_double.o countpairs_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_double.o ../../utils/gridlink_utils_float.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DD' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDrppi' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_rp_pi.c -o countpairs_rp_pi.o ar rcs libcountpairs_rp_pi.a countpairs_rp_pi.o countpairs_rp_pi_impl_double.o countpairs_rp_pi_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_double.o ../../utils/gridlink_utils_float.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDrppi' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDsmu' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_s_mu.c -o countpairs_s_mu.o ar rcs libcountpairs_s_mu.a countpairs_s_mu.o countpairs_s_mu_impl_double.o countpairs_s_mu_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/DDsmu' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/wp' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_wp.c -o countpairs_wp.o ar rcs libcountpairs_wp.a countpairs_wp.o countpairs_wp_impl_double.o countpairs_wp_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/wp' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/xi' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_xi.c -o countpairs_xi.o ar rcs libcountpairs_xi.a countpairs_xi.o countpairs_xi_impl_double.o countpairs_xi_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/xi' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/vpf' gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres.c -o countspheres.o ar rcs libcountspheres.a countspheres.o countspheres_impl_double.o countspheres_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/vpf' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/examples' make[2]: Nothing to be done for 'lib'. make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/examples' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/python_bindings' make[2]: Nothing to be done for 'lib'. make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory/python_bindings' make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/theory' make -C mocks libs make[1]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks' -------COMPILE SETTINGS------------ MAKE = ["make"] CC = ["gcc"] OPT = ["-DOUTPUT_RPAVG -DENABLE_MIN_SEP_OPT -DCOPY_PARTICLES -DLINK_IN_DEC -DLINK_IN_RA -DDOUBLE_PREC -DUSE_OMP"] CFLAGS = [" -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs "] CLINK = [" -lrt -fopenmp -lm"] PYTHON = ["/global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9"] GSL_CFLAGS = ["-I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include"] GSL_LINK = ["-L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib"] PYTHON_CFLAGS = ["-isystem/global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9 -isystem /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/numpy/core/include/numpy/"] -------END OF COMPILE SETTINGS------------ for dir in DDrppi_mocks DDtheta_mocks DDsmu_mocks vpf_mocks examples python_bindings; do \ make -C $dir lib; \ done make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/DDrppi_mocks' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_rp_pi_mocks_impl.h.src >> countpairs_rp_pi_mocks_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_rp_pi_mocks_impl.h.src >> countpairs_rp_pi_mocks_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_rp_pi_mocks_kernels.c.src >> countpairs_rp_pi_mocks_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_rp_pi_mocks_kernels.c.src >> countpairs_rp_pi_mocks_kernels_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/gridlink_mocks_impl.h.src >> ../../utils/gridlink_mocks_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/gridlink_mocks_impl.h.src >> ../../utils/gridlink_mocks_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/cellarray_mocks.h.src >> ../../utils/cellarray_mocks_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/cellarray_mocks.h.src >> ../../utils/cellarray_mocks_double.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countpairs_rp_pi_mocks.c -o countpairs_rp_pi_mocks.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_rp_pi_mocks_impl.c.src >> countpairs_rp_pi_mocks_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countpairs_rp_pi_mocks_impl_double.c -o countpairs_rp_pi_mocks_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_rp_pi_mocks_impl.c.src >> countpairs_rp_pi_mocks_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countpairs_rp_pi_mocks_impl_float.c -o countpairs_rp_pi_mocks_impl_float.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" ../../utils/gridlink_mocks_impl.c.src >> ../../utils/gridlink_mocks_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c ../../utils/gridlink_mocks_impl_float.c -o ../../utils/gridlink_mocks_impl_float.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" ../../utils/gridlink_mocks_impl.c.src >> ../../utils/gridlink_mocks_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c ../../utils/gridlink_mocks_impl_double.c -o ../../utils/gridlink_mocks_impl_double.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c ../../utils/set_cosmo_dist.c -o ../../utils/set_cosmo_dist.o gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c ../../utils/cosmology_params.c -o ../../utils/cosmology_params.o ar rcs libcountpairs_rp_pi_mocks.a countpairs_rp_pi_mocks.o countpairs_rp_pi_mocks_impl_double.o countpairs_rp_pi_mocks_impl_float.o ../../utils/gridlink_mocks_impl_float.o ../../utils/gridlink_mocks_impl_double.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o ../../utils/set_cosmo_dist.o ../../utils/cosmology_params.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/DDrppi_mocks' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/DDtheta_mocks' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_theta_mocks_impl.h.src >> countpairs_theta_mocks_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_theta_mocks_impl.h.src >> countpairs_theta_mocks_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_theta_mocks_kernels.c.src >> countpairs_theta_mocks_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_theta_mocks_kernels.c.src >> countpairs_theta_mocks_kernels_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_theta_mocks_impl.c.src >> countpairs_theta_mocks_impl_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_theta_mocks_impl.c.src >> countpairs_theta_mocks_impl_float.c gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_theta_mocks.c -o countpairs_theta_mocks.o gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_theta_mocks_impl_float.c -o countpairs_theta_mocks_impl_float.o gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -c countpairs_theta_mocks_impl_double.c -o countpairs_theta_mocks_impl_double.o ar rcs libcountpairs_theta_mocks.a countpairs_theta_mocks.o countpairs_theta_mocks_impl_float.o countpairs_theta_mocks_impl_double.o ../../utils/gridlink_mocks_impl_float.o ../../utils/gridlink_mocks_impl_double.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/DDtheta_mocks' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/DDsmu_mocks' sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_s_mu_mocks_impl.h.src >> countpairs_s_mu_mocks_impl_double.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_s_mu_mocks_impl.h.src >> countpairs_s_mu_mocks_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_s_mu_mocks_kernels.c.src >> countpairs_s_mu_mocks_kernels_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_s_mu_mocks_kernels.c.src >> countpairs_s_mu_mocks_kernels_double.c gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countpairs_s_mu_mocks.c -o countpairs_s_mu_mocks.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countpairs_s_mu_mocks_impl.c.src >> countpairs_s_mu_mocks_impl_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countpairs_s_mu_mocks_impl_double.c -o countpairs_s_mu_mocks_impl_double.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countpairs_s_mu_mocks_impl.c.src >> countpairs_s_mu_mocks_impl_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countpairs_s_mu_mocks_impl_float.c -o countpairs_s_mu_mocks_impl_float.o ar rcs libcountpairs_s_mu_mocks.a countpairs_s_mu_mocks.o countpairs_s_mu_mocks_impl_double.o countpairs_s_mu_mocks_impl_float.o ../../utils/gridlink_mocks_impl_float.o ../../utils/gridlink_mocks_impl_double.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o ../../utils/set_cosmo_dist.o ../../utils/cosmology_params.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/DDsmu_mocks' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/vpf_mocks' sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countspheres_mocks_impl.h.src >> countspheres_mocks_impl_float.h sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countspheres_mocks_impl.h.src >> countspheres_mocks_impl_double.h gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres_mocks.c -o countspheres_mocks.o sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" countspheres_mocks_impl.c.src >> countspheres_mocks_impl_float.c sed -e "/DOUBLE_PREC/!s/DOUBLE/float/g" vpf_mocks_kernels.c.src >> vpf_mocks_kernels_float.c gcc -DNDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres_mocks_impl_float.c -o countspheres_mocks_impl_float.o sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" countspheres_mocks_impl.c.src >> countspheres_mocks_impl_double.c sed -e "/DOUBLE_PREC/!s/DOUBLE/double/g" vpf_mocks_kernels.c.src >> vpf_mocks_kernels_double.c gcc -DDOUBLE_PREC -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../io -I../../utils -I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include -c countspheres_mocks_impl_double.c -o countspheres_mocks_impl_double.o ar rcs libcountspheres_mocks.a countspheres_mocks.o countspheres_mocks_impl_float.o countspheres_mocks_impl_double.o ../../utils/gridlink_impl_float.o ../../utils/gridlink_impl_double.o ../../utils/gridlink_utils_float.o ../../utils/gridlink_utils_double.o ../../utils/utils.o ../../utils/progressbar.o ../../utils/cpu_features.o ../../utils/avx512_calls.o ../../utils/set_cosmo_dist.o ../../utils/cosmology_params.o make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/vpf_mocks' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/examples' make[2]: Nothing to be done for 'lib'. make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/examples' make[2]: Entering directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/python_bindings' make[2]: Nothing to be done for 'lib'. make[2]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks/python_bindings' make[1]: Leaving directory '/tmp/pip-install-ounu781n/corrfunc_36569d221d1e4769897cba09517f88c3/mocks' /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/__init__.py:148: SetuptoolsDeprecationWarning: setup_requires is deprecated. Supply build dependencies using PEP 517 pyproject.toml build-requires. warnings.warn( running install /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/utils.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/tests.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/io.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/call_correlation_functions_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/call_correlation_functions.py -> build/lib.linux-x86_64-3.9/Corrfunc copying Corrfunc/__init__.py -> build/lib.linux-x86_64-3.9/Corrfunc creating build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/xi.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/wp.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/vpf.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/__init__.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/DDsmu.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/DDrppi.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory copying Corrfunc/theory/DD.py -> build/lib.linux-x86_64-3.9/Corrfunc/theory creating build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/vpf_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/__init__.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/DDtheta_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/DDsmu_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks copying Corrfunc/mocks/DDrppi_mocks.py -> build/lib.linux-x86_64-3.9/Corrfunc/mocks running egg_info writing Corrfunc.egg-info/PKG-INFO writing dependency_links to Corrfunc.egg-info/dependency_links.txt writing requirements to Corrfunc.egg-info/requires.txt writing top-level names to Corrfunc.egg-info/top_level.txt reading manifest file 'Corrfunc.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'INSTALL' warning: no files found matching 'docs' warning: no previously-included files found matching 'theory/tests/data/random_Zspace.ff' warning: no previously-included files found matching 'mocks/tests/data/Mr19_randoms_northonly.rdcz.ff' adding license file 'LICENSE' writing manifest file 'Corrfunc.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-3.9/mocks creating build/lib.linux-x86_64-3.9/mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock.DD -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock.DR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_DDsmu.DR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_DDsmu.RR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_vpf -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_wtheta.DD -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_mock_wtheta.DR -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/Mr19_randoms_vpf -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/angular_bins -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests copying Corrfunc/../mocks/tests/bins -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests creating build/lib.linux-x86_64-3.9/mocks/tests/data copying Corrfunc/../mocks/tests/data/Mr19_centers_xyz_forVPF_rmax_10Mpc.txt -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests/data copying Corrfunc/../mocks/tests/data/Mr19_mock_northonly.rdcz.dat -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests/data copying Corrfunc/../mocks/tests/data/Mr19_mock_northonly.rdcz.ff -> build/lib.linux-x86_64-3.9/Corrfunc/../mocks/tests/data creating build/lib.linux-x86_64-3.9/theory creating build/lib.linux-x86_64-3.9/theory/tests copying Corrfunc/../theory/tests/Mr19_DD_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DD_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDrppi_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDrppi_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDsmu_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_DDsmu_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_vpf_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_wp -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/Mr19_xi -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/bins -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_DD_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_DR_nonperiodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_DR_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests copying Corrfunc/../theory/tests/cmass_RR_periodic -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests creating build/lib.linux-x86_64-3.9/theory/tests/data copying Corrfunc/../theory/tests/data/cmassmock_Zspace.ff -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests/data copying Corrfunc/../theory/tests/data/gals_Mr19.ff -> build/lib.linux-x86_64-3.9/Corrfunc/../theory/tests/data running build_ext -------COMPILE SETTINGS------------ MAKE = ["make"] CC = ["gcc"] OPT = ["-DPERIODIC -DENABLE_MIN_SEP_OPT -DCOPY_PARTICLES -DUSE_OMP"] CFLAGS = [" -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs "] CLINK = [" -lrt -fopenmp -lm"] PYTHON = ["/global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9"] GSL_CFLAGS = ["-I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include"] GSL_LINK = ["-L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib"] PYTHON_CFLAGS = ["-isystem/global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9 -isystem /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/numpy/core/include/numpy/"] -------END OF COMPILE SETTINGS------------ gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../theory/DD -I../../theory/DDrppi -I../../theory/wp -I../../theory/xi -I../../theory/DDsmu -I../../theory/vpf -isystem/global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9 -isystem /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/numpy/core/include/numpy/ -I../../io -I../../utils _countpairs.c -c -o _countpairs.o gcc _countpairs.o ../../theory/DD/libcountpairs.a ../../theory/DDrppi/libcountpairs_rp_pi.a ../../theory/wp/libcountpairs_wp.a ../../theory/xi/libcountpairs_xi.a ../../theory/DDsmu/libcountpairs_s_mu.a ../../theory/vpf/libcountspheres.a -lrt -fopenmp -lm -L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -Xlinker -soname -Xlinker "_countpairs.cpython-39-x86_64-linux-gnu.so.2" -shared -o _countpairs.so.2.4.0 rm -f _countpairs.so ln -s _countpairs.so.2.4.0 _countpairs.so -------COMPILE SETTINGS------------ MAKE = ["make"] CC = ["gcc"] OPT = ["-DOUTPUT_RPAVG -DENABLE_MIN_SEP_OPT -DCOPY_PARTICLES -DLINK_IN_DEC -DLINK_IN_RA -DDOUBLE_PREC -DUSE_OMP"] CFLAGS = [" -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs "] CLINK = [" -lrt -fopenmp -lm"] PYTHON = ["/global/homes/l/lgarriso/miniforge3/envs/cf-inst/bin/python3.9"] GSL_CFLAGS = ["-I/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/include"] GSL_LINK = ["-L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib"] PYTHON_CFLAGS = ["-isystem/global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9 -isystem /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/numpy/core/include/numpy/"] -------END OF COMPILE SETTINGS------------ gcc -DVERSION=\"2.4.0\" -DUSE_UNICODE -std=c99 -m64 -g -Wsign-compare -Wall -Wextra -Wshadow -Wunused -fPIC -D_POSIX_SOURCE=200809L -D_GNU_SOURCE -D_DARWIN_C_SOURCE -O3 -ftree-vectorize -funroll-loops -fprefetch-loop-arrays --param simultaneous-prefetches=4 -fopenmp -funroll-loops -march=native -fno-strict-aliasing -Wformat=2 -Wpacked -Wnested-externs -Wpointer-arith -Wredundant-decls -Wfloat-equal -Wcast-qual -Wcast-align -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wstrict-prototypes -Wno-unused-local-typedefs -I../../mocks/DDrppi_mocks -I../../mocks/DDtheta_mocks -I../../mocks/vpf_mocks -I../../mocks/DDsmu_mocks -isystem/global/homes/l/lgarriso/miniforge3/envs/cf-inst/include/python3.9 -isystem /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/numpy/core/include/numpy/ -I../../io -I../../utils _countpairs_mocks.c -c -o _countpairs_mocks.o gcc _countpairs_mocks.o ../../mocks/DDrppi_mocks/libcountpairs_rp_pi_mocks.a ../../mocks/DDtheta_mocks/libcountpairs_theta_mocks.a ../../mocks/vpf_mocks/libcountspheres_mocks.a ../../mocks/DDsmu_mocks/libcountpairs_s_mu_mocks.a -lrt -fopenmp -lm -L/global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -lgsl -lgslcblas -lm -Xlinker -rpath -Xlinker /global/common/sw/cray/cnl7/haswell/gsl/2.5/intel/19.0.3.199/7twqxxq/lib -Xlinker -soname -Xlinker "_countpairs_mocks.cpython-39-x86_64-linux-gnu.so.2" -shared -o _countpairs_mocks.so.2.4.0 rm -f _countpairs_mocks.so ln -s _countpairs_mocks.so.2.4.0 _countpairs_mocks.so running install_lib creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests/data copying build/lib.linux-x86_64-3.9/theory/tests/data/gals_Mr19.ff -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests/data copying build/lib.linux-x86_64-3.9/theory/tests/data/cmassmock_Zspace.ff -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests/data copying build/lib.linux-x86_64-3.9/theory/tests/cmass_RR_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/cmass_DR_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/cmass_DR_nonperiodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/cmass_DD_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/bins -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_xi -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_wp -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_vpf_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_DDsmu_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_DDsmu_nonperiodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_DDrppi_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_DDrppi_nonperiodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_DD_periodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests copying build/lib.linux-x86_64-3.9/theory/tests/Mr19_DD_nonperiodic -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/theory/tests creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests/data copying build/lib.linux-x86_64-3.9/mocks/tests/data/Mr19_mock_northonly.rdcz.ff -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests/data copying build/lib.linux-x86_64-3.9/mocks/tests/data/Mr19_mock_northonly.rdcz.dat -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests/data copying build/lib.linux-x86_64-3.9/mocks/tests/data/Mr19_centers_xyz_forVPF_rmax_10Mpc.txt -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests/data copying build/lib.linux-x86_64-3.9/mocks/tests/bins -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/angular_bins -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_randoms_vpf -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock_wtheta.DR -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock_wtheta.DD -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock_vpf -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock_DDsmu.RR -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock_DDsmu.DR -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock.DR -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests copying build/lib.linux-x86_64-3.9/mocks/tests/Mr19_mock.DD -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/mocks/tests creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/_countpairs_mocks.cpython-39-x86_64-linux-gnu.so -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/_countpairs.cpython-39-x86_64-linux-gnu.so -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks copying build/lib.linux-x86_64-3.9/Corrfunc/mocks/DDrppi_mocks.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks copying build/lib.linux-x86_64-3.9/Corrfunc/mocks/DDsmu_mocks.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks copying build/lib.linux-x86_64-3.9/Corrfunc/mocks/DDtheta_mocks.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks copying build/lib.linux-x86_64-3.9/Corrfunc/mocks/__init__.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks copying build/lib.linux-x86_64-3.9/Corrfunc/mocks/vpf_mocks.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks creating /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/DD.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/DDrppi.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/DDsmu.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/__init__.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/vpf.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/wp.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/theory/xi.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory copying build/lib.linux-x86_64-3.9/Corrfunc/__init__.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/call_correlation_functions.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/call_correlation_functions_mocks.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/io.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/tests.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc copying build/lib.linux-x86_64-3.9/Corrfunc/utils.py -> /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks/DDrppi_mocks.py to DDrppi_mocks.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks/DDsmu_mocks.py to DDsmu_mocks.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks/DDtheta_mocks.py to DDtheta_mocks.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks/__init__.py to __init__.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/mocks/vpf_mocks.py to vpf_mocks.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/DD.py to DD.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/DDrppi.py to DDrppi.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/DDsmu.py to DDsmu.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/__init__.py to __init__.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/vpf.py to vpf.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/wp.py to wp.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/theory/xi.py to xi.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/__init__.py to __init__.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/call_correlation_functions.py to call_correlation_functions.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/call_correlation_functions_mocks.py to call_correlation_functions_mocks.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/io.py to io.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/tests.py to tests.cpython-39.pyc byte-compiling /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc/utils.py to utils.cpython-39.pyc running install_egg_info Copying Corrfunc.egg-info to /global/homes/l/lgarriso/miniforge3/envs/cf-inst/lib/python3.9/site-packages/Corrfunc-2.4.0-py3.9.egg-info running install_scripts writing list of installed files to '/tmp/pip-record-b8bod4yh/install-record.txt' Running setup.py install for corrfunc ... done DEPRECATION: corrfunc was installed using the legacy 'setup.py install' method, because a wheel could not be built for it. A possible replacement is to fix the wheel build issue reported above. Discussion can be found at https://github.com/pypa/pip/issues/8368 Successfully installed corrfunc-2.4.0 numpy-1.21.4 ```
manodeep commented 2 years ago

I am confused - if a matching numpy is not present at the build_ext stage, then shouldn't the install fail? (I see that we need better handling of missing numpy case within common.mk but that's a separate issue). About building wheels, I thought we can't build/distribute wheels because of #236 and incompatible package name (Corrfunc instead of corrfunc) right?

We do need to upgrade our setup machinery - it's been creaking along for many years now :)

manodeep commented 1 year ago

While fixing the build failures (#290), I upgraded the minimum python version to py3.7. That means a bunch of the os.path etc routines can now be replaced with Pathlib.Path routines