mansuylab / project6_bc2021

Investigating differential exon usage and differential 3’ untranslated regions in spermatogonial cells across development

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Exploratory data analysis post-differential-analysis #3

Open dktanwar opened 3 years ago

dktanwar commented 3 years ago

MA plot

Wiki page Interpretation of differential gene expression results of RNA-seq data: review and integration

x-axis: logCPM
y-axis: logFC
color the dots with c

Volcano plot

Wiki EnhancedVolcano

x-axis: logFC
y-axis: -log10(adjusted-p-val)
color the dots with adjusted-p-val <= 0.05 & absolute logFC >= 1

Heatmap of differentially expressed bins

Make a subset of SE for the bins with adjusted-p-val
Make a heatmap of the normalized counts with SEtools

dktanwar commented 3 years ago

@Chabbeyj @BuglianiD