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Umbrella: Python3 compatibility in doc tests #20672

Closed josephframsay closed 6 years ago

josephframsay commented 6 years ago

Changes required

As part of the move to Python3, many of the doc tests need to be refactored slightly in order to be compatible. It is expected that this will mostly be a matter of changing to the new functional-style print statements.

After refactoring, tests should work in both Python2 and Python3, without the use of __future__ imports. You should test against a Python3 build of Mantid to be sure - instructions for building with 3 are here.

Refactoring print statements

Note: according to PEP3101, the % operator for string formatting will eventually be deprecated. If it's a choice between % and .format, it's probably best to go for .format. Some nice information on formatting floats with .format can be found here

Please pick a chunk of 10 to 15 algorithm at a time:

  1. Pick algorithms from the top
    • You may find it easiest to pick a chunk that you can easily make regex for, for instance ^Load[R-H] covers all files in #20800, so running the tests is relatively painless
  2. Write a comment on this issue, listing the algorithms you picked. Also move those algorithms to the Assigned/Done list
  3. Make sure no one picked the same algorithm while writing the comment (refresh page).
  4. Create an issue, start refactoring, and create a PR. See below for a template for copy and paste to make creating the issue quicker.
  5. Do not hesitate to create the PR early for an intermediate review

Relevant files are found in mantid/docs/source/algorithms. Look here for how to run doc tests locally

Issue template:

Python3 doctest compatibility: algorithms <X to Y>

This issue is part of the move to Python3 in the doctests, 
Algorithms covered in this issue are:

PR template (edit as needed):

Python3 doctest compatibility: algorithms <X to Y>

## Description of work.
This PR is part of refactoring effort to bring Python3 compatiblity into the doctests.
See https://github.com/mantidproject/mantid/issues/20672 for details.

The following tests were refactored to be compatible :

## To test.

Code review.

Fixes <your issue>.
Internal change, no release notes

Algorithms assigned/done

    Abins
    AbortRemoteJob
    AbsorptionCorrection
    AccumulateMD
    AddLogDerivative
    AddNote
    AddPeak
    AddPeakHKL
    AddSampleLog
    AddSampleLogMultiple
    AddTimeSeriesLog
    AlignAndFocusPowder
    AlignAndFocusPowderFromFiles
    AlignComponents
    AlignDetectors
    AlphaCalc
    AndMD
    AngularAutoCorrelationsSingleAxis
    AngularAutoCorrelationsTwoAxes
    AnnularRingAbsorption
    AnvredCorrection
    AppendGeometryToSNSNexus
    AppendSpectra
    ApplyCalibration
    ApplyDeadTimeCorr
    ApplyDetailedBalance
    ApplyPaalmanPingsCorrection
    ApplyTransmissionCorrection
    AsymmetryCalc
    Authenticate
    AverageLogData
    BASISReduction
    BASISReduction311
    BayesQuasi
    BayesStretch
    Bin2DPowderDiffraction
    BinMD
    BinWidthAtX
    BinaryOperateMasks
    CalMuonDeadTime
    CalMuonDetectorPhases
    CalculateChiSquared
    CalculateCostFunction
    CalculateCountRate
    CalculateCoverageDGS
    CalculateDIFC
    CalculateEfficiency
    CalculateFlatBackground
    CalculateMuonAsymmetry
    CalculatePeaksHKL
    CalculateSampleTransmission
    CalculateSlits
    CalculateTransmission
    CalculateTransmissionBeamSpreader
    CalculateUMatrix
    CalculateZscore
    CalibrateRectangularDetectors
    CatalogDownloadDataFiles
    CatalogGetDataFiles
    CatalogGetDataSets
    CatalogKeepAlive
    CatalogListInstruments
    CatalogListInvestigationTypes
    CatalogLogin
    CatalogLogout
    CatalogMyDataSearch
    CatalogPublish
    CatalogSearch
    CentroidPeaks
    ChangeBinOffset
    ChangeLogTime
    ChangePulsetime
    ChangeQConvention
    ChangeTimeZero
    CheckForSampleLogs
    CheckMantidVersion
    CheckWorkspacesMatch
    ChopData
    CleanFileCache
    ClearCache
    ClearInstrumentParameters
    ClearMaskFlag
    ClearUB
    CloneMDWorkspace
    CloneWorkspace
    CollectHB3AExperimentInfo
    CombinePeaksWorkspaces
    Comment
    CompactMD
    CompareMDWorkspaces
    CompareSampleLogs
    CompareWorkspaces
    CompressEvents
    ComputeCalibrationCoefVan
    ComputeIncoherentDOS
    ComputeSensitivity
    ConjoinFiles
    ConjoinSpectra
    ConjoinWorkspaces
    ConjoinXRuns
    ConvertAxesToRealSpace
    ConvertAxisByFormula
    ConvertCWPDMDToSpectra
    ConvertCWSDExpToMomentum
    ConvertCWSDMDtoHKL
    ConvertDiffCal
    ConvertEmptyToTof
    ConvertFromDistribution
    ConvertMDHistoToMatrixWorkspace
    ConvertMultipleRunsToSingleCrystalMD
    ConvertSnsRoiFileToMask
    ConvertSpectrumAxis
    ConvertSpiceDataToRealSpace
    ConvertTableToMatrixWorkspace
    ConvertToConstantL2
    ConvertToDetectorFaceMD
    ConvertToDiffractionMDWorkspace
    ConvertToDistribution
    ConvertToEventWorkspace
    ConvertToHistogram
    ConvertToMD
    ConvertToMDMinMaxGlobal
    ConvertToMDMinMaxLocal
    ConvertToMatrixWorkspace
    ConvertToPointData
    ConvertToReflectometryQ
    ConvertToYSpace
    ConvertUnits
    ConvertUnitsUsingDetectorTable
    ConvolutionFitSequential
    ConvolveWorkspaces
    CopyDetectorMapping
    CopyInstrumentParameters
    CopyLogs
    CopySample
    CorelliCrossCorrelate
    CorrectKiKf
    CorrectLogTimes
    CorrectTOF
    CorrectTOFAxis
    CorrectToFile
    CountReflections
    CreateCacheFilename
    CreateCalFileByNames
    CreateChopperModel
    CreateChunkingFromInstrument
    CreateDummyCalFile
    CreateEPP
    CreateEmptyTableWorkspace
    CreateFlatEventWorkspace
    CreateGroupingWorkspace
    CreateLeBailFitInput
    CreateLogPropertyTable
    CreateLogTimeCorrection
    CreateMD
    CreateMDHistoWorkspace
    CreateMDWorkspace
    CreateModeratorModel
    CreatePSDBleedMask
    CreatePeaksWorkspace
    CreateSampleShape
    CreateSampleWorkspace
    CreateSimulationWorkspace
    CreateSingleValuedWorkspace
    CreateTransmissionWorkspace
    CreateTransmissionWorkspaceAuto
    CreateUserDefinedBackground
    CreateWorkspace
    CropToComponent
    CropWorkspace
    CrossCorrelate
    CrystalFieldEnergies
    CuboidGaugeVolumeAbsorption
    CutMD
    CylinderAbsorption
    CylinderPaalmanPingsCorrection
    DNSComputeDetEffCorrCoefs
    DNSFlippingRatioCorr
    DNSMergeRuns
    DPDFreduction
    DakotaChiSquared
    DefineGaugeVolume
    DeleteLog
    DeleteTableRows
    DeleteWorkspace
    DeleteWorkspaces
    DeltaPDF3D
    DetectorDiagnostic
    DetectorEfficiencyCor
    DetectorEfficiencyCorUser
    DetectorEfficiencyVariation
    DetectorFloodWeighting
    DetermineChunking
    DgsAbsoluteUnitsReduction
    DgsConvertToEnergyTransfer
    DgsDiagnose
    DgsPreprocessData
    DgsProcessDetectorVanadium
    DgsReduction
    DgsRemap
    DiffPeaksWorkspaces
    DiffractionEventCalibrateDetectors
    DiffractionFocussing
    DirectILLApplySelfShielding
    DirectILLCollectData
    DirectILLDiagnostics
    DirectILLIntegrateVanadium
    DirectILLReduction
    DirectILLSelfShielding
    Divide
    DivideMD
    DownloadFile
    DownloadInstrument
    DownloadRemoteFile
    EQSANSAzimuthalAverage1D
    EQSANSDarkCurrentSubtraction
    EQSANSDirectBeamTransmission
    EQSANSLoad
    EQSANSMonitorTOF
    EQSANSNormalise
    EQSANSPatchSensitivity
    EQSANSQ2D
    EQSANSResolution
    EQSANSTofStructure
    EditInstrumentGeometry
    ElasticWindow
    ElasticWindowMultiple
    EnergyWindowScan
    EnggCalibrate
    EnggCalibrateFull
    EnggFitDIFCFromPeaks
    EnggFitPeaks
    EnggFocus
    EnggVanadiumCorrections
    EqualToMD
    EstimateFitParameters
    EstimateMuonAsymmetryFromCounts
    EstimatePeakErrors
    EstimateResolutionDiffraction
    EvaluateFunction
    EvaluateMDFunction
    ExaminePowderDiffProfile
    ExampleSaveAscii
    Exponential
    ExponentialCorrection
    ExponentialMD
    ExportExperimentLog
    ExportGeometry
    ExportSampleLogsToCSVFile
    ExportSpectraMask
    ExportTimeSeriesLog
    ExtractFFTSpectrum
    ExtractMask
    ExtractMaskToTable
    ExtractMonitorWorkspace
    ExtractMonitors
    ExtractSingleSpectrum
    ExtractSpectra
    ExtractUnmaskedSpectra
    FFT
    FFTDerivative
    FFTSmooth
    FakeISISEventDAE
    FakeISISHistoDAE
    FakeMDEventData
    FilterBadPulses
    FilterByLogValue
    FilterByTime
    FilterByXValue
    FilterEvents
    FilterEventsByLogValuePreNexus
    FilterLogByTime
    FilterPeaks
    FindCenterOfMassPosition
    FindClusterFaces
    FindDeadDetectors
    FindDetectorsInShape
    FindDetectorsOutsideLimits
    FindDetectorsPar
    FindEPP
    FindPeakBackground
    FindPeaks
    FindPeaksMD
    FindReflectometryLines
    FindSXPeaks
    FindUBUsingFFT
    FindUBUsingIndexedPeaks
    FindUBUsingLatticeParameters
    FindUBUsingMinMaxD
    Fit
    FitGaussian
    FitPeak
    FitPowderDiffPeaks
    FitResolutionConvolvedModel
    FixGSASInstrumentFile
    FlatPlateAbsorption
    FlatPlatePaalmanPingsCorrection
    GSASIIRefineFitPeaks
    GeneralisedSecondDifference
    GenerateEventsFilter
    GenerateGroupingPowder
    GenerateGroupingSNSInelastic
    GenerateIPythonNotebook
    GeneratePeaks
    GeneratePythonScript
    GetAllEi
    GetDetOffsetsMultiPeaks
    GetDetectorOffsets
    GetEi
    GetEiMonDet
    GetEiT0atSNS
    GetIPTS
    GetQsInQENSData
    GetSpiceDataRawCountsFromMD
    GetTimeSeriesLogInformation
    GoniometerAnglesFromPhiRotation
    GreaterThanMD
    GroupDetectors
    GroupWorkspaces
    HFIRDarkCurrentSubtraction
    HFIRLoad
    HFIRSANSNormalise
    HFIRSANSReduction
    HRPDSlabCanAbsorption
    HasUB
    He3TubeEfficiency
    IQTransform
    ISISIndirectDiffractionReduction
    ISISIndirectEnergyTransfer
    IdentifyNoisyDetectors
    ImportMDEventWorkspace
    ImportMDHistoWorkspace
    IndexPeaks
    IndexSXPeaks
    IndirectAnnulusAbsorption
    IndirectCalibration
    IndirectCylinderAbsorption
    IndirectDiffScan
    IndirectFlatPlateAbsorption
    IndirectILLEnergyTransfer
    IndirectILLReductionFWS
    IndirectILLReductionQENS
    IndirectQuickRun
    IndirectResolution
    IndirectSampleChanger
    IndirectTransmission
    IndirectTransmissionMonitor
    IntegrateByComponent
    IntegrateEPP
    IntegrateEllipsoids
    IntegrateEllipsoidsTwoStep
    IntegrateFlux
    IntegrateMDHistoWorkspace
    IntegratePeakTimeSlices
    IntegratePeaksCWSD
    IntegratePeaksHybrid
    IntegratePeaksMD
    IntegratePeaksMDHKL
    IntegratePeaksUsingClusters
    Integration
    InterpolatingRebin
    InvertMDDim
    InvertMask
    IqtFitMultiple
    IqtFitSequential
    LRAutoReduction
    LRDirectBeamSort
    LRPeakSelection
    LRPrimaryFraction
    LRReflectivityOutput
    LRScalingFactors
    LRSubtractAverageBackground
    LeBailFit
    LessThanMD
    LineProfile
    LiquidsReflectometryReduction
Load-v1
LoadAscii-v2
LoadBBY-v1
LoadCIF-v1
LoadCalFile-v1
LoadCanSAS1D-v1
LoadCanSAS1D-v2
LoadDNSLegacy-v1
LoadDetectorInfo-v1
LoadDetectorsGroupingFile-v1
LoadDspacemap-v1
LoadEmptyInstrument-v1
LoadEmptyVesuvio-v1
LoadEventAndCompress-v1
LoadEventNexus-v1
LoadFITS-v1
LoadFlexiNexus-v1
LoadFullprofFile-v1
LoadFullprofResolution-v1
LoadGSASInstrumentFile-v1
LoadHKL-v1
LoadIDFFromNexus-v1
LoadILLDiffraction-v1
LoadILLIndirect-v2
LoadILLReflectometry-v1
LoadILLSANS-v1
LoadILLTOF-v2
LoadISISNexus-v2
LoadInstrument-v1
LoadInstrumentFromNexus-v1
LoadInstrumentFromRaw-v1
LoadIsawDetCal-v1
LoadIsawPeaks-v1
LoadIsawSpectrum-v1
LoadIsawUB-v1
LoadLLB-v1
LoadLog-v1
LoadLogPropertyTable-v1
LoadMD-v1
LoadMLZ-v1
LoadMappingTable-v1
LoadMask-v1
LoadMcStas-v1
LoadMultipleGSS-v1
LoadMuonLog-v1
LoadMuonNexus-v2
LoadNMoldyn3Ascii-v1
LoadNMoldyn4Ascii-v1
LoadNMoldyn4Ascii1D-v1
LoadNXcanSAS-v1
LoadNexus-v1
LoadNexusLogs-v1
LoadNexusMonitors-v1
LoadNexusMonitors-v2
LoadNexusProcessed-v1
LoadParameterFile-v1
LoadPreNexusLive-v1
LoadPreNexusMonitors-v1
LoadRKH-v1
LoadRaw-v3
LoadRawBin0-v1
LoadRawSpectrum0-v1
LoadSESANS-v1
LoadSINQ-v1
LoadSINQFile-v1
LoadSINQFocus-v1
LoadSPE-v1
LoadSQW-v1
LoadSampleDetailsFromRaw-v1
LoadSassena-v1
LoadSpiceAscii-v1
LoadSpiceXML2DDet-v1
LoadVTK-v1
LoadVesuvio-v1
LoadVisionElasticBS-v1
LoadVisionElasticEQ-v1
LoadVisionInelastic-v1
LoadVulcanCalFile-v1
Logarithm-v1
LorentzCorrection-v1
MDHistoToWorkspace2D-v1
MDNormDirectSC-v1
MDNormSCD-v1
MDNormSCDPreprocessIncoherent-v1
MSDFit-v1
MagFormFactorCorrection-v1
MaskAngle-v1
MaskBTP-v1
MaskBins-v1
MaskBinsFromTable-v1
MaskDetectors-v1
MaskDetectorsInShape-v1
MaskPeaksWorkspace-v1
MaskWorkspaceToCalFile-v1
MatchPeaks-v1
Max-v1
MaxEnt-v1
MaxMin-v1
MayersSampleCorrection-v1
Mean-v1
MedianBinWidth-v1
MergeCalFiles-v1
MergeLogs-v1
MergeMD-v1
MergeRuns-v1
Min-v1
Minus-v1
ModeratorTzero-v1
ModeratorTzeroLinear-v1
ModifyDetectorDotDatFile-v1
MolDyn-v1
MonitorEfficiencyCorUser-v1
MonteCarloAbsorption-v1
MoveInstrumentComponent-v1
MultipleScatteringCylinderAbsorption-v1
Multiply-v1
MultiplyRange-v1
MuonGroupDetectors-v1
MuonProcess-v1
MuscatData-v1
MuscatFunc-v1
MuscatSofQW-v1
NMoldyn4Interpolation-v1
NRCalculateSlitResolution-v1
NormaliseByCurrent-v1
NormaliseByDetector-v1
NormaliseByPeakArea-v1
NormaliseByThickness-v1
NormaliseSpectra-v1
NormaliseToMonitor-v1
NormaliseToUnity-v1
NormaliseVanadium-v1
OSIRISDiffractionReduction-v1
OneMinusExponentialCor-v1
OptimizeCrystalPlacement-v1
OptimizeLatticeForCellType-v1
PDCalibration-v1
PDFFourierTransform-v1
PDLoadCharacterizations-v1
PaddingAndApodization-v1
Pause-v1
PawleyFit-v1
PeakIntensityVsRadius-v1
PeaksInRegion-v1
PeaksOnSurface-v1
PerformIndexOperations-v1
PhaseQuad-v1
PlotAsymmetryByLogValue-v1
PlotPeakByLogValue-v1
Plus-v1
PoissonErrors-v1
PoldiAnalyseResiduals-v1
PoldiAutoCorrelation-v5
PoldiCreatePeaksFromCell-v1
PoldiCreatePeaksFromFile-v1
PoldiDataAnalysis-v1
PoldiFitPeaks1D-v1
PoldiFitPeaks1D-v2
PoldiFitPeaks2D-v1
PoldiIndexKnownCompounds-v1
PoldiLoadRuns-v1
PoldiMerge-v1
PoldiPeakSearch-v1
PoldiPeakSummary-v1
PoldiTruncateData-v1
PolynomialCorrection-v1
Power-v1
PowerLawCorrection-v1
PredictFractionalPeaks-v1
PredictPeaks-v1
PreprocessDetectorsToMD-v1
ProcessBackground-v1
ProcessIndirectFitParameters-v1
ProjectMD-v1
QueryMDWorkspace-v1
RRFMuon-v1
RayTracerTester-v1
ReadGroupsFromFile-v1
RealFFT-v1
Rebin-v1
Rebin2D-v1
RebinByPulseTimes-v1
Rebunch-v1
RecordPythonScript-v1
ReflectometryReductionOne-v1
ReflectometryReductionOne-v2
ReflectometryReductionOneAuto-v1
ReflectometryReductionOneAuto-v2
Regroup-v1
RemoveBackground-v1
RemoveBins-v1
RemoveExpDecay-v1
RemoveLogs-v1
RemoveMaskedSpectra-v1
RemovePromptPulse-v1
RemoveWorkspaceHistory-v1
RenameLog-v1
RenameWorkspace-v1
RenameWorkspaces-v1
ReplaceSpecialValues-v1
ReplicateMD-v1
ResNorm-v1
ResNorm-v2
ResizeRectangularDetector-v1
RetrieveRunInfo-v1
RingProfile-v1
RotateInstrumentComponent-v1
RotateSource-v1
RunPythonScript-v1
SANSBeamFluxCorrection-v1
SANSConvertToWavelengthAndRebin-v1
SANSDarkRunBackgroundCorrection-v1
SANSFitShiftScale-v1
SANSStitch-v1
SANSWideAngleCorrection-v1
SCDCalibratePanels-v1
SassenaFFT-v1
SaveANSTOAscii-v1
SaveAscii-v2
SaveCSV-v1
SaveCanSAS1D-v1
SaveCanSAS1D-v2
SaveDaveGrp-v1
SaveDetectorsGrouping-v1
SaveDiffFittingAscii-v1
SaveDspacemap-v1
SaveFITS-v1
SaveFocusedXYE-v1
SaveFullprofResolution-v1
SaveGSASInstrumentFile-v1
SaveGSS-v1
SaveHKL-v1
SaveILLCosmosAscii-v1
SaveISISNexus-v1
SaveIsawPeaks-v1
SaveIsawUB-v1
SaveLauenorm-v1
SaveMD-v1
SaveMD-v2
SaveMDWorkspaceToVTK-v1
SaveMask-v1
SaveNISTDAT-v1
SaveNXSPE-v1
SaveNXTomo-v1
SaveNXcanSAS-v1
SaveNexus-v1
SaveNexusProcessed-v1
SaveOpenGenieAscii-v1
SavePAR-v1
SavePDFGui-v1
SavePHX-v1
SaveParameterFile-v1
SavePlot1D-v1
SavePlot1DAsJson-v1
SaveRKH-v1
SaveSESANS-v1
SaveSPE-v1
SaveTBL-v1
SaveToSNSHistogramNexus-v1
SaveVulcanGSS-v1
SaveYDA-v1
SaveZODS-v1
Scale-v1
ScaleX-v1
SelectCellOfType-v1
SelectCellWithForm-v1
SelectNexusFilesByMetadata-v1
SetBeam-v1
SetDetScale-v1
SetGoniometer-v1
SetInstrumentParameter-v1
SetMDFrame-v1
SetSample-v1
SetUB-v1
SetupILLD33Reduction-v1
ShiftLogTime-v1
ShowPeakHKLOffsets-v1
ShowPossibleCells-v1
SignalOverError-v1
SimpleShapeMonteCarloAbsorption-v1
SimulatedDensityOfStates-v1
SingleCrystalDiffuseReduction-v1
SliceMD-v1
SliceMDHisto-v1
SmoothData-v1
SmoothMD-v1
SmoothNeighbours-v1
SofQW-v1
SofQWCentre-v1
SofQWMoments-v1
SofQWMomentsScan-v1
SofQWNormalisedPolygon-v1
SofQWPolygon-v1
SolidAngle-v1
SortByQVectors-v1
SortDetectors-v1
SortEvents-v1
SortHKL-v1
SortPeaksWorkspace-v1
SortTableWorkspace-v1
SpatialGrouping-v1
SpecularReflectionCalculateTheta-v1
SpecularReflectionCalculateTheta-v2
SpecularReflectionPositionCorrect-v1
SpecularReflectionPositionCorrect-v2
SphericalAbsorption-v1
SplineBackground-v1
SplineInterpolation-v1
SplineSmoothing-v1
Squares-v1
StartLiveData-v1
StatisticsOfPeaksWorkspace-v1
StatisticsOfTableWorkspace-v1
Stitch1D-v3
Stitch1DMany-v1
StringToPng-v1
StripVanadiumPeaks-v1
StripVanadiumPeaks-v2
SuggestTibCNCS-v1
SuggestTibHYSPEC-v1
SumEventsByLogValue-v1
SumNeighbours-v1
SumRowColumn-v1
SumSpectra-v1
SwapWidths-v1
Symmetrise-v1
TOFTOFCropWorkspace-v1
TOFTOFMergeRuns-v1
TOSCABankCorrection-v1
ThresholdMD-v1
TimeSlice-v1
TransformHKL-v1
TransformToIqt-v1
Transpose-v1
TransposeMD-v1
UnwrapMonitor-v1
UnwrapMonitorsInTOF-v1
UnwrapSNS-v1
UpdateInstrumentFromFile-v1
UpdatePeakParameterTableValue-v1
UpdateScriptRepository-v1
VelocityAutoCorrelations-v1
VelocityCrossCorrelations-v1
VesuvioCalculateGammaBackground-v1
VesuvioCalculateMS-v1
VesuvioCorrections-v1
VesuvioDiffractionReduction-v1
VesuvioL1ThetaResolution-v1
VesuvioPeakPrediction-v1
VesuvioPreFit-v1
VesuvioResolution-v1
VesuvioTOFFit-v1
VesuvioThickness-v1
ViewBOA-v1
VisionReduction-v1
WeightedMean-v1
WeightedMeanOfWorkspace-v1
WienerSmooth-v1
WorkflowAlgorithmRunner-v1

Concepts Done

concepts/Algorithm
concepts/CrystalStructureAndReflections
concepts/EventWorkspace
concepts/FABADA
concepts/FacilitiesFile
concepts/Fitting
concepts/HistogramData
concepts/HowToDefineGeometricShape
concepts/Howtoresetdetectorscalibration
concepts/IndexProperty
concepts/Instrument
concepts/InstrumentAccessLayers
concepts/InstrumentDataService
concepts/InstrumentDefinitionFile
concepts/InstrumentParameterFile
concepts/LETSampleIDF
concepts/MDHistoWorkspace
concepts/MDWorkspace
concepts/MatrixWorkspace
concepts/ORNL_SANS_Reduction
concepts/PeaksWorkspace
concepts/PointAndSpaceGroups
concepts/PropertiesFile
concepts/Run
concepts/SANS2DSampleIDF
concepts/Sample
concepts/SampleEnvironment
concepts/SymmetryGroups
concepts/TableWorkspaces
concepts/UnitFactory
concepts/Workspace
concepts/Workspace2D
concepts/WorkspaceGroup
concepts/calibration/CalFile
concepts/calibration/TubeCalibration

Fit Functrions

fitfunctions/CrystalFieldHeatCapacity
fitfunctions/CrystalFieldMagnetisation
fitfunctions/CrystalFieldMoment
fitfunctions/CrystalFieldSusceptibility
fitfunctions/ElasticIsoRotDiff
fitfunctions/InelasticIsoRotDiff
fitfunctions/IsoRotDiff
fitfunctions/LatticeFunction
fitfunctions/PrimStretchedExpFT
fitfunctions/StretchedExpFT
fitfunctions/TabulatedFunction
fitfunctions/TeixeiraWaterSQE

Algorithms to do

None, but see below

There are also a number of files in concepts and fitfunctions which will need taking care of:

All done or in progress
josephframsay commented 6 years ago

20673

    Abins
    AbortRemoteJob
    AbsorptionCorrection
    AccumulateMD
    AddLogDerivative
    AddNote
    AddPeak
    AddPeakHKL
    AddSampleLog
    AddSampleLogMultiple
    AddTimeSeriesLog
    AlignAndFocusPowder
    AlignAndFocusPowderFromFiles
    AlignComponents
    AlignDetectors
    AlphaCalc    
    AndMD
    AngularAutoCorrelationsSingleAxis
    AngularAutoCorrelationsTwoAxes
    AnnularRingAbsorption
    AnvredCorrection
    AppendGeometryToSNSNexus
    AppendSpectra
    ApplyCalibration
    ApplyDeadTimeCorr
    ApplyDetailedBalance
    ApplyPaalmanPingsCorrection
    ApplyTransmissionCorrection
    AsymmetryCalc
    Authenticate
    AverageLogData
samueljackson92 commented 6 years ago

20674

    BASISReduction
    BASISReduction311
    BayesQuasi
    BayesStretch
    Bin2DPowderDiffraction
    BinMD
    BinWidthAtX
    BinaryOperateMasks
    CalMuonDeadTime
    CalMuonDetectorPhases
josephframsay commented 6 years ago

20689

CalculateChiSquared
CalculateCostFunction
CalculateCountRate
CalculateCoverageDGS
CalculateDIFC
CalculateEfficiency
CalculateFlatBackground
CalculateMuonAsymmetry
CalculatePeaksHKL
CalculateSampleTransmission
CalculateSlits
CalculateTransmission
CalculateTransmissionBeamSpreader
CalculateUMatrix
CalculateZscore
CalibrateRectangularDetectors
CatalogDownloadDataFiles
CatalogGetDataFiles
CatalogGetDataSets
CatalogKeepAlive
CatalogListInstruments
CatalogListInvestigationTypes
CatalogLogin
CatalogLogout
CatalogMyDataSearch
CatalogPublish
CatalogSearch
CentroidPeaks
ChangeBinOffset
ChangeLogTime
ChangePulsetime
ChangeQConvention
ChangeTimeZero
CheckForSampleLogs
CheckMantidVersion
CheckWorkspacesMatch
ChopData
CleanFileCache
ClearCache
ClearInstrumentParameters
ClearMaskFlag
ClearUB
CloneMDWorkspace
CloneWorkspace
CollectHB3AExperimentInfo
CombinePeaksWorkspaces
Comment
CompactMD
CompareMDWorkspaces
CompareSampleLogs
CompareWorkspaces
CompressEvents
ComputeCalibrationCoefVan
ComputeIncoherentDOS
ComputeSensitivity
josephframsay commented 6 years ago 
ConjoinFiles
ConjoinSpectra
ConjoinWorkspaces
ConjoinXRuns
ConvertAxesToRealSpace
ConvertAxisByFormula
ConvertCWPDMDToSpectra
ConvertCWSDExpToMomentum
ConvertCWSDMDtoHKL
ConvertDiffCal
ConvertEmptyToTof
ConvertFromDistribution
ConvertMDHistoToMatrixWorkspace
ConvertMultipleRunsToSingleCrystalMD
ConvertSnsRoiFileToMask
ConvertSpectrumAxis
ConvertSpiceDataToRealSpace
ConvertTableToMatrixWorkspace
ConvertToConstantL2
ConvertToDetectorFaceMD
ConvertToDiffractionMDWorkspace
ConvertToDistribution
ConvertToEventWorkspace
ConvertToHistogram
ConvertToMD
ConvertToMDMinMaxGlobal
ConvertToMDMinMaxLocal
ConvertToMatrixWorkspace
ConvertToPointData
ConvertToReflectometryQ
ConvertToYSpace
ConvertUnits
ConvertUnitsUsingDetectorTable
ConvolutionFitSequential
ConvolveWorkspaces
josephframsay commented 6 years ago

20712

CopyDetectorMapping
CopyInstrumentParameters
CopyLogs
CopySample
CorelliCrossCorrelate
CorrectKiKf
CorrectLogTimes
CorrectTOF
CorrectTOFAxis
CorrectToFile
CountReflections
CreateCacheFilename
CreateCalFileByNames
CreateChopperModel
CreateChunkingFromInstrument
CreateDummyCalFile
CreateEPP
CreateEmptyTableWorkspace
CreateFlatEventWorkspace
CreateGroupingWorkspace
CreateLeBailFitInput
CreateLogPropertyTable
CreateLogTimeCorrection
CreateMD
CreateMDHistoWorkspace
CreateMDWorkspace
CreateModeratorModel
CreatePSDBleedMask
CreatePeaksWorkspace
CreateSampleShape
CreateSampleWorkspace
CreateSimulationWorkspace
CreateSingleValuedWorkspace
CreateTransmissionWorkspace
CreateTransmissionWorkspaceAuto
CreateUserDefinedBackground
CreateWorkspace
soininen commented 6 years ago

20713

CropToComponent
CropWorkspace
CrossCorrelate
CrystalFieldEnergies
CuboidGaugeVolumeAbsorption
CutMD
CylinderAbsorption
CylinderPaalmanPingsCorrection
DNSComputeDetEffCorrCoefs
DNSFlippingRatioCorr
DNSMergeRuns
DPDFreduction
edwardb96 commented 6 years ago

20715

    DefineGaugeVolume
    DeleteLog
    DeleteTableRows
    DeleteWorkspace
    DeleteWorkspaces
    DeltaPDF3D
    DetectorDiagnostic
    DetectorEfficiencyCor
    DetectorEfficiencyCorUser
    DetectorEfficiencyVariation
    DetectorFloodWeighting
    DetermineChunking
    DgsAbsoluteUnitsReduction
    DgsConvertToEnergyTransfer
    DgsDiagnose
    DgsPreprocessData
    DgsProcessDetectorVanadium
    DgsReduction
    DgsRemap
    DiffPeaksWorkspaces
    DiffractionEventCalibrateDetectors
    DiffractionFocussing
    DirectILLApplySelfShielding
    DirectILLCollectData
    DirectILLDiagnostics
    DirectILLIntegrateVanadium
    DirectILLReduction
    DirectILLSelfShielding
    Divide
    DivideMD
    DownloadFile
    DownloadInstrument
    DownloadRemoteFile
josephframsay commented 6 years ago

20718

EQSANSAzimuthalAverage1D
EQSANSDarkCurrentSubtraction
EQSANSDirectBeamTransmission
EQSANSLoad
EQSANSMonitorTOF
EQSANSNormalise
EQSANSPatchSensitivity
EQSANSQ2D
EQSANSResolution
EQSANSTofStructure
EditInstrumentGeometry
ElasticWindow
ElasticWindowMultiple
EnergyWindowScan
EnggCalibrate
EnggCalibrateFull
EnggFitDIFCFromPeaks
EnggFitPeaks
EnggFocus
EnggVanadiumCorrections
EqualToMD
EstimateFitParameters
EstimateMuonAsymmetryFromCounts
EstimatePeakErrors
EstimateResolutionDiffraction
EvaluateFunction
EvaluateMDFunction
ExaminePowderDiffProfile
ExampleSaveAscii
Exponential
ExponentialCorrection
ExponentialMD
ExportExperimentLog
ExportGeometry
ExportSampleLogsToCSVFile
ExportSpectraMask
ExportTimeSeriesLog
ExtractFFTSpectrum
ExtractMask
ExtractMaskToTable
ExtractMonitorWorkspace
ExtractMonitors
ExtractSingleSpectrum
ExtractSpectra
ExtractUnmaskedSpectra
josephframsay commented 6 years ago 
FFT
FFTDerivative
FFTSmooth
FakeISISEventDAE
FakeISISHistoDAE
FakeMDEventData
FilterBadPulses
FilterByLogValue
FilterByTime
FilterByXValue
FilterEvents
FilterEventsByLogValuePreNexus
FilterLogByTime
FilterPeaks
FindCenterOfMassPosition
FindClusterFaces
FindDeadDetectors
FindDetectorsInShape
FindDetectorsOutsideLimits
FindDetectorsPar
FindEPP
FindPeakBackground
FindPeaks
FindPeaksMD
FindReflectometryLines
FindSXPeaks
FindUBUsingFFT
FindUBUsingIndexedPeaks
FindUBUsingLatticeParameters
FindUBUsingMinMaxD
Fit
FitGaussian
FitPeak
FitPowderDiffPeaks
FitResolutionConvolvedModel
FixGSASInstrumentFile
FlatPlateAbsorption
FlatPlatePaalmanPingsCorrection
samueljackson92 commented 6 years ago

20759

    GSASIIRefineFitPeaks
    GeneralisedSecondDifference
    GenerateEventsFilter
    GenerateGroupingPowder
    GenerateGroupingSNSInelastic
    GenerateIPythonNotebook
    GeneratePeaks
    GeneratePythonScript
    GetAllEi
    GetDetOffsetsMultiPeaks
    GetDetectorOffsets
    GetEi
    GetEiMonDet
    GetEiT0atSNS
    GetIPTS
    GetQsInQENSData
    GetSpiceDataRawCountsFromMD
    GetTimeSeriesLogInformation
    GoniometerAnglesFromPhiRotation
    GreaterThanMD
    GroupDetectors
    GroupWorkspaces
ElliotAOram commented 6 years ago

20762

    HFIRDarkCurrentSubtraction
    HFIRLoad
    HFIRSANSNormalise
    HFIRSANSReduction
    HRPDSlabCanAbsorption
    HasUB
    He3TubeEfficiency
    IQTransform
    ISISIndirectDiffractionReduction
    ISISIndirectEnergyTransfer
    IdentifyNoisyDetectors
    ImportMDEventWorkspace
    ImportMDHistoWorkspace
    IndexPeaks
    IndexSXPeaks
    IndirectAnnulusAbsorption
    IndirectCalibration
    IndirectCylinderAbsorption
    IndirectDiffScan
    IndirectFlatPlateAbsorption
    IndirectILLEnergyTransfer
    IndirectILLReductionFWS
    IndirectILLReductionQENS
    IndirectQuickRun
    IndirectResolution
    IndirectSampleChanger
    IndirectTransmission
    IndirectTransmissionMonitor
soininen commented 6 years ago

20772

    IntegrateByComponent
    IntegrateEPP
    IntegrateEllipsoids
    IntegrateEllipsoidsTwoStep
    IntegrateFlux
    IntegrateMDHistoWorkspace
    IntegratePeakTimeSlices
    IntegratePeaksCWSD
    IntegratePeaksHybrid
    IntegratePeaksMD
    IntegratePeaksMDHKL
    IntegratePeaksUsingClusters
    Integration
josephframsay commented 6 years ago

20774

InterpolatingRebin
InvertMDDim
InvertMask
IqtFitMultiple
IqtFitSequential
LRAutoReduction
LRDirectBeamSort
LRPeakSelection
LRPrimaryFraction
LRReflectivityOutput
LRScalingFactors
LRSubtractAverageBackground
LeBailFit
LessThanMD
LineProfile
LiquidsReflectometryReduction
josephframsay commented 6 years ago

20786

Load-v1
LoadAscii-v2
LoadBBY-v1
LoadCIF-v1
LoadCalFile-v1
LoadCanSAS1D-v1
LoadCanSAS1D-v2
LoadDNSLegacy-v1
LoadDetectorInfo-v1
LoadDetectorsGroupingFile-v1
LoadDspacemap-v1
LoadEmptyInstrument-v1
LoadEmptyVesuvio-v1
LoadEventAndCompress-v1
LoadEventNexus-v1
LoadFITS-v1
LoadFlexiNexus-v1
LoadFullprofFile-v1
LoadFullprofResolution-v1
LoadGSASInstrumentFile-v1
LoadHKL-v1
josephframsay commented 6 years ago

20789

LoadIDFFromNexus-v1
LoadILLDiffraction-v1
LoadILLIndirect-v2
LoadILLReflectometry-v1
LoadILLSANS-v1
LoadILLTOF-v2
LoadISISNexus-v2
LoadInstrument-v1
LoadInstrumentFromNexus-v1
LoadInstrumentFromRaw-v1
LoadIsawDetCal-v1
LoadIsawPeaks-v1
LoadIsawSpectrum-v1
LoadIsawUB-v1
LoadLLB-v1
LoadLog-v1
LoadLogPropertyTable-v1
josephframsay commented 6 years ago

20793

LoadMD-v1
LoadMLZ-v1
LoadMappingTable-v1
LoadMask-v1
LoadMcStas-v1
LoadMultipleGSS-v1
LoadMuonLog-v1
LoadMuonNexus-v2
LoadNMoldyn3Ascii-v1
LoadNMoldyn4Ascii-v1
LoadNMoldyn4Ascii1D-v1
LoadNXcanSAS-v1
LoadNexus-v1
LoadNexusLogs-v1
LoadNexusMonitors-v1
LoadNexusMonitors-v2
LoadNexusProcessed-v1
LoadParameterFile-v1
LoadPreNexusLive-v1
LoadPreNexusMonitors-v1
josephframsay commented 6 years ago

20800

LoadRKH-v1
LoadRaw-v3
LoadRawBin0-v1
LoadRawSpectrum0-v1
LoadSESANS-v1
LoadSINQ-v1
LoadSINQFile-v1
LoadSINQFocus-v1
LoadSPE-v1
LoadSQW-v1
LoadSampleDetailsFromRaw-v1
LoadSassena-v1
LoadSpiceAscii-v1
LoadSpiceXML2DDet-v1
LoadVTK-v1
LoadVesuvio-v1
LoadVisionElasticBS-v1
LoadVisionElasticEQ-v1
LoadVisionInelastic-v1
LoadVulcanCalFile-v1
josephframsay commented 6 years ago

20803

MaskWorkspaceToCalFile-v1
MatchPeaks-v1
Max-v1
MaxEnt-v1
MaxMin-v1
MayersSampleCorrection-v1
Mean-v1
MedianBinWidth-v1
MergeCalFiles-v1
MergeLogs-v1
MergeMD-v1
MergeRuns-v1
Min-v1
Minus-v1
josephframsay commented 6 years ago

20806

ModeratorTzero-v1
ModeratorTzeroLinear-v1
ModifyDetectorDotDatFile-v1
MolDyn-v1
MonitorEfficiencyCorUser-v1
MonteCarloAbsorption-v1
MoveInstrumentComponent-v1
MultipleScatteringCylinderAbsorption-v1
Multiply-v1
MultiplyRange-v1
MuonGroupDetectors-v1
MuonProcess-v1
MuscatData-v1
MuscatFunc-v1
MuscatSofQW-v1
josephframsay commented 6 years ago

20808

NMoldyn4Interpolation-v1
NRCalculateSlitResolution-v1
NormaliseByCurrent-v1
NormaliseByDetector-v1
NormaliseByPeakArea-v1
NormaliseByThickness-v1
NormaliseSpectra-v1
NormaliseToMonitor-v1
NormaliseToUnity-v1
NormaliseVanadium-v1
OSIRISDiffractionReduction-v1
OneMinusExponentialCor-v1
OptimizeCrystalPlacement-v1
OptimizeLatticeForCellType-v1
PDCalibration-v1
PDFFourierTransform-v1
PDLoadCharacterizations-v1
brandonhewer commented 6 years ago

Issue #20802

Logarithm-v1
LorentzCorrection-v1
MDHistoToWorkspace2D-v1
MDNormDirectSC-v1
MDNormSCD-v1
MDNormSCDPreprocessIncoherent-v1
MSDFit-v1
MagFormFactorCorrection-v1
MaskAngle-v1
MaskBTP-v1
MaskBins-v1
MaskBinsFromTable-v1
MaskDetectors-v1
MaskDetectorsInShape-v1
MaskPeaksWorkspace-v1
brandonhewer commented 6 years ago

Issue #20811 

PaddingAndApodization-v1
Pause-v1
PawleyFit-v1
PeakIntensityVsRadius-v1
PeaksInRegion-v1
PeaksOnSurface-v1
PerformIndexOperations-v1
PhaseQuad-v1
PlotAsymmetryByLogValue-v1
PlotPeakByLogValue-v1
Plus-v1
PoissonErrors-v1
PoldiAnalyseResiduals-v1
PoldiAutoCorrelation-v5
PoldiCreatePeaksFromCell-v1
brandonhewer commented 6 years ago

Issue #20815 

PoldiCreatePeaksFromFile-v1
PoldiDataAnalysis-v1
PoldiFitPeaks1D-v1
PoldiFitPeaks1D-v2
PoldiFitPeaks2D-v1
PoldiIndexKnownCompounds-v1
PoldiLoadRuns-v1
PoldiMerge-v1
PoldiPeakSearch-v1
PoldiPeakSummary-v1
PoldiTruncateData-v1
PolynomialCorrection-v1
Power-v1
PowerLawCorrection-v1
PredictFractionalPeaks-v1
josephframsay commented 6 years ago

20816

PredictPeaks-v1
PreprocessDetectorsToMD-v1
ProcessBackground-v1
ProcessIndirectFitParameters-v1
ProjectMD-v1
QueryMDWorkspace-v1
RRFMuon-v1
RayTracerTester-v1
ReadGroupsFromFile-v1
RealFFT-v1
Rebin-v1
Rebin2D-v1
RebinByPulseTimes-v1
Rebunch-v1
RecordPythonScript-v1
ReflectometryReductionOne-v1
ReflectometryReductionOne-v2
ReflectometryReductionOneAuto-v1
ReflectometryReductionOneAuto-v2
Regroup-v1
brandonhewer commented 6 years ago

Issue #20818 

RemoveBackground-v1
RemoveBins-v1
RemoveExpDecay-v1
RemoveLogs-v1
RemoveMaskedSpectra-v1
RemovePromptPulse-v1
RemoveWorkspaceHistory-v1
RenameLog-v1
RenameWorkspace-v1
RenameWorkspaces-v1
ReplaceSpecialValues-v1
ReplicateMD-v1
ResNorm-v1
ResNorm-v2
ResizeRectangularDetector-v1
brandonhewer commented 6 years ago

Issue #20820

RetrieveRunInfo-v1
RingProfile-v1
RotateInstrumentComponent-v1
RotateSource-v1
RunPythonScript-v1
SANSBeamFluxCorrection-v1
SANSConvertToWavelengthAndRebin-v1
SANSDarkRunBackgroundCorrection-v1
SANSFitShiftScale-v1
SANSStitch-v1
SANSWideAngleCorrection-v1
SCDCalibratePanels-v1
SassenaFFT-v1
SaveANSTOAscii-v1
SaveAscii-v2
brandonhewer commented 6 years ago

Issue #20823

SaveCSV-v1
SaveCanSAS1D-v1
SaveCanSAS1D-v2
SaveDaveGrp-v1
SaveDetectorsGrouping-v1
SaveDiffFittingAscii-v1
SaveDspacemap-v1
SaveFITS-v1
SaveFocusedXYE-v1
SaveFullprofResolution-v1
SaveGSASInstrumentFile-v1
SaveGSS-v1
SaveHKL-v1
SaveILLCosmosAscii-v1
SaveISISNexus-v1
brandonhewer commented 6 years ago

Issue #20825

SaveIsawPeaks-v1
SaveIsawUB-v1
SaveLauenorm-v1
SaveMD-v1
SaveMD-v2
SaveMDWorkspaceToVTK-v1
SaveMask-v1
SaveNISTDAT-v1
SaveNXSPE-v1
SaveNXTomo-v1
SaveNXcanSAS-v1
SaveNexus-v1
SaveNexusProcessed-v1
SaveOpenGenieAscii-v1
SavePAR-v1
brandonhewer commented 6 years ago

Issue #20827 

SavePDFGui-v1
SavePHX-v1
SaveParameterFile-v1
SavePlot1D-v1
SavePlot1DAsJson-v1
SaveRKH-v1
SaveSESANS-v1
SaveSPE-v1
SaveTBL-v1
SaveToSNSHistogramNexus-v1
SaveVulcanGSS-v1
SaveYDA-v1
SaveZODS-v1
Scale-v1
ScaleX-v1
josephframsay commented 6 years ago

20830

SelectCellOfType-v1
SelectCellWithForm-v1
SelectNexusFilesByMetadata-v1
SetBeam-v1
SetDetScale-v1
SetGoniometer-v1
SetInstrumentParameter-v1
SetMDFrame-v1
SetSample-v1
SetUB-v1
SetupILLD33Reduction-v1
ShiftLogTime-v1
ShowPeakHKLOffsets-v1
ShowPossibleCells-v1
SignalOverError-v1
SimpleShapeMonteCarloAbsorption-v1
SimulatedDensityOfStates-v1
SingleCrystalDiffuseReduction-v1
SliceMD-v1
SliceMDHisto-v1
NickDraper commented 6 years ago

I've taken 

SmoothData-v1
SmoothMD-v1
SmoothNeighbours-v1
SofQW-v1
SofQWCentre-v1
SofQWMoments-v1
SofQWMomentsScan-v1
SofQWNormalisedPolygon-v1
SofQWPolygon-v1
SolidAngle-v1
SortByQVectors-v1
SortDetectors-v1
SortEvents-v1
SortHKL-v1
SortPeaksWorkspace-v1
SortTableWorkspace-v1
SpatialGrouping-v1
SpecularReflectionCalculateTheta-v1
SpecularReflectionCalculateTheta-v2
SpecularReflectionPositionCorrect-v1
SpecularReflectionPositionCorrect-v2
SphericalAbsorption-v1
SplineBackground-v1
SplineInterpolation-v1
SplineSmoothing-v1
Squares-v1
StartLiveData-v1
StatisticsOfPeaksWorkspace-v1
StatisticsOfTableWorkspace-v1
Stitch1D-v3
Stitch1DMany-v1
StringToPng-v1
StripVanadiumPeaks-v1
StripVanadiumPeaks-v2
SuggestTibCNCS-v1
SuggestTibHYSPEC-v1
SumEventsByLogValue-v1
SumNeighbours-v1
SumRowColumn-v1
SumSpectra-v1
SwapWidths-v1
Symmetrise-v1
TOFTOFCropWorkspace-v1
TOFTOFMergeRuns-v1
TOSCABankCorrection-v1
ThresholdMD-v1
TimeSlice-v1
NickDraper commented 6 years ago

I've taken

TransformHKL-v1
TransformToIqt-v1
Transpose-v1
TransposeMD-v1
UnwrapMonitor-v1
UnwrapMonitorsInTOF-v1
UnwrapSNS-v1
UpdateInstrumentFromFile-v1
UpdatePeakParameterTableValue-v1
UpdateScriptRepository-v1
VelocityAutoCorrelations-v1
VelocityCrossCorrelations-v1
VesuvioCalculateGammaBackground-v1
VesuvioCalculateMS-v1
VesuvioCorrections-v1
VesuvioDiffractionReduction-v1
VesuvioL1ThetaResolution-v1
VesuvioPeakPrediction-v1
VesuvioPreFit-v1
VesuvioResolution-v1
VesuvioTOFFit-v1
VesuvioThickness-v1
ViewBOA-v1
VisionReduction-v1
WeightedMean-v1
WeightedMeanOfWorkspace-v1
WienerSmooth-v1
WorkflowAlgorithmRunner-v1
NickDraper commented 6 years ago

Taking the concepts

concepts/Algorithm
concepts/CrystalStructureAndReflections
concepts/EventWorkspace
concepts/FABADA
concepts/FacilitiesFile
concepts/Fitting
concepts/HistogramData
concepts/HowToDefineGeometricShape
concepts/Howtoresetdetectorscalibration
concepts/IndexProperty
concepts/Instrument
concepts/InstrumentAccessLayers
concepts/InstrumentDataService
concepts/InstrumentDefinitionFile
concepts/InstrumentParameterFile
concepts/LETSampleIDF
concepts/MDHistoWorkspace
concepts/MDWorkspace
concepts/MatrixWorkspace
concepts/ORNL_SANS_Reduction
concepts/PeaksWorkspace
concepts/PointAndSpaceGroups
concepts/PropertiesFile
concepts/Run
concepts/SANS2DSampleIDF
concepts/Sample
concepts/SampleEnvironment
concepts/SymmetryGroups
concepts/TableWorkspaces
concepts/UnitFactory
concepts/Workspace
concepts/Workspace2D
concepts/WorkspaceGroup
concepts/calibration/CalFile
concepts/calibration/TubeCalibration
NickDraper commented 6 years ago

Taken Fit Functrions

fitfunctions/CrystalFieldHeatCapacity
fitfunctions/CrystalFieldMagnetisation
fitfunctions/CrystalFieldMoment
fitfunctions/CrystalFieldSusceptibility
fitfunctions/ElasticIsoRotDiff
fitfunctions/InelasticIsoRotDiff
fitfunctions/IsoRotDiff
fitfunctions/LatticeFunction
fitfunctions/PrimStretchedExpFT
fitfunctions/StretchedExpFT
fitfunctions/TabulatedFunction
fitfunctions/TeixeiraWaterSQE
NickDraper commented 6 years ago

Once the last of these PR's is done this can be closed

rosswhitfield commented 6 years ago

We are waiting on @samueljackson92 with #20759 and @edwardb96 with #20715

rosswhitfield commented 6 years ago

Still waiting on @edwardb96 with #20715

edwardb96 commented 6 years ago

Sorry @rosswhitfield I should have put a note on the issue/unassigned myself.

I wasn't able to get the doc tests to run without crashing (fedora 26 - search xcb on slack tech-qa) so if someone else wants to take on #20715 or knows how to get them to run without producing 

X Error: GLXBadContext 170
  Extension:    155 (Uknown extension)
  Minor opcode: 6 (Unknown request)
  Resource id:  0x2e000a9
[xcb] Unknown sequence number while processing queue
[xcb] Most likely this is a multi-threaded client and XInitThreads has not been called
[xcb] Aborting, sorry about that.
MantidPlot: xcb_io.c:259: poll_for_event: Assertion `!xcb_xlib_threads_sequence_lost' failed.
Aborted (core dumped)

that would be great.