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manuel-munoz-aguirre / PyHIST

A pipeline to segment tissue from the background in histological images
GNU General Public License v3.0
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Support for tumor segmentation #19

Open jmayank23 opened 3 years ago

jmayank23 commented 3 years ago

I am building a model to perform tumor segmentation from WSI. I have the original slides and the tumor binary masks (both in tif format) Is it possible to extract the ground truth tiles as well using PyHist?

manuel-munoz-aguirre commented 3 years ago

Custom masks are currently not supported as part of the default pipeline, although the functions to do this are already implemented. Will likely add this feature in a future release.

jmayank23 commented 3 years ago

Got it, thank you for the reply