HI @mapleforest, I am running a test trial from the documentation you provided. Running this step, the output ./{assembly_name}_A.fa.gz is empty. I don't know what could be the problem. Please have a look. This messes up with the whole pipeline. The separating haplotypes step is working okay with the samples (genome.fa.gz) provided.
HI @mapleforest, I am running a test trial from the documentation you provided. Running this step, the output ./{assembly_name}_A.fa.gz is empty. I don't know what could be the problem. Please have a look. This messes up with the whole pipeline. The separating haplotypes step is working okay with the samples (genome.fa.gz) provided.