I work with 3Gb diploid soft-masked assembly and got more than 700Gb memory consumption at A3 stage, during pathFinder.
I changed only scoreMatrix.q (create genome-specific), thread number to 48, "--traceback=1G" within all_lastz.ctl and increase identity to 85% within batch.A1 script.
Hi Dr Huang,
I work with 3Gb diploid soft-masked assembly and got more than 700Gb memory consumption at A3 stage, during pathFinder. I changed only scoreMatrix.q (create genome-specific), thread number to 48, "--traceback=1G" within all_lastz.ctl and increase identity to 85% within batch.A1 script.