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mapping-commons / sssom-py

Python toolkit for SSSOM mapping format
https://mapping-commons.github.io/sssom-py/index.html#
MIT License
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Add ConceptMap2 (FHIR) importer #211

Open matentzn opened 2 years ago

matentzn commented 2 years ago

@DaveraGabriel has been working on a mapping between SSSOM and ConceptMap2. From the perspective of SSSOM, it would be great to have an importer for ConceptMap2 datasets based on her work. Maybe this could be done as part of TIMS, by someone like @joeflack4, but right this moment. This would also serve as a way to operationalise and solidify Davera's mapping, and make the effort of alignment on the SSSOM side (i.e. extending SSSOM to accommodate metadata only present in ConceptMap2).

Note the alignment should be an issue on the sssom repo, bit since @DaveraGabriel is driving it, we will keep it as part of TIMS and focus here on the technical implementation.

joeflack4 commented 2 years ago

Related issue: https://github.com/HOT-Ecosystem/hapi-fhir-jpaserver-starter/issues/3

joeflack4 commented 2 years ago

Just adding a note that I discussed this with Shahim on last week, and he liked the idea. Sounds like I'm the right person to work on this. Will likely get to this eventually, though at this point it looks like our preferred first priority is to develop an SSSOM extension on the existing ConceptMap resource..