search

maragkakislab / nanoplen

Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.
Other
1 stars 2 forks source link

Create similar file system (columns & headings) as that of DESEQ2 so users can apply the pipelines already present for deseq2 like files #14

Closed dar19 closed 2 years ago

dar19 commented 3 years ago

Create similar file system (columns & headings) as that of DESeq2 so users can apply the pipelines already present for DESeq2 like files.

Can we get the Average of both control replicates and treatment replicates seperately as columns in nanoplen output.

mnsmar commented 2 years ago

For the first, we tried to align it with the output of DESeq2 but since these tools are doing different things it's not going to be an exact match.

@dar19 has the second question been addressed?