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marbl / CHM13

The complete sequence of a human genome
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PacBio HIFI raw data #36

Closed ebioman closed 2 years ago

ebioman commented 2 years ago

Hello, please let me thank you first for this great effort and releasing publicly all data ! I was curious though concerning the PacBio HIFI raw data as I could not find the publishing directory of these. Are only the CCS reads available or is there a possibility to access as well the raw sub-reads instead ? Cheers

ebioman commented 2 years ago

Okay found this in the same git, just got confused with the structure - sorry:

here direct link for anybody confused in the future ;)

HiFi Data A total of 100 Gbp of data (32.4x coverage) in HiFi 20 kbp libraries (used for v0.9-v1.1 assemblies) is available from NCBI. An additional 76 Gbp of data (24.4x coverage) is available in HiFi 10 kbp libraries at NCBI. The raw subreads for the 20 kbp libraries are available below. raw subreads (genome DNA) (NOTE: there are the individual raw subreads NOT HiFi reads. Most users will want to download the HiFi reads the links above). m64062_190803_042216 aka SRR11292121 (md5: 2d0ad55219b0df9b3d2de08e678e5504) m64062_190803_042216 aka SRR11292121 index (md5: 87ab91aa1bad393d33d4cda03c6c375c) m64062_190804_172951 aka SRR11292123 (md5: 26c2a3592678acfa10c46063b4276079) m64062_190804_172951 aka SRR11292123 index (md5: c504880737ff3b50fbfdde00cca731db) m64062_190806_063919 aka SRR11292120 (md5: 2ff780371484d6471625d1d08e6d2bdb) m64062_190806_063919 aka SRR11292120 index (md5: d24bd26ee375ca6d5a077f26a0602941)