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marbl / CHM13

The complete sequence of a human genome
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MySQL files #43

Open yzJiang9 opened 2 years ago

yzJiang9 commented 2 years ago

Hi, I am writing to ask whether you have some MySQL files available, just as files on the Ensembl? Thanks!

https://ftp.ensembl.org/pub/release-105/mysql/homo_sapiens_core_105_38/

arangrhie commented 2 years ago

Hello @yzJiang9,

If you are looking for gene annotations, currently, it is only available through the CHM13 UCSC browser. All raw data of each tracks can be downloaded from here. So far, we only have gene annotations available in gff3 format.

Stay tuned for RefSeq and Ensembl gene annotation, which will become available in a month or two. Of note, the Ensembl team has not yet decided to release the MySQL files along with it. The UCSC team is building a database backed browser as well, however the MySQL structure is very different.

Will follow up once we have more information available.

Best, Arang