Closed erikhuck closed 2 years ago
Also I'd be happy to make a pull request with the answers to these questions included in the README for future researchers
Does that answer your questions?
Thank you @skoren for your quick reply. I first thought that we had to use the BNX file to create a reference compatible with bionano data, but it turns out bionano has a tool to convert NGS sequence data into a compatible reference for optical map samples. So we would have to use the "T2T sequence itself" as you described it and convert it to a format compatible with bionano data. Is the T2T sequence (telomere to telomere for all chromosomes including Y) available in this repository?
Yes, it's available at NCBI. I just added a link to their record on the README
I have a few questions about these files