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marbl / CHM13

The complete sequence of a human genome
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Rel3 Ultra-long vs regular ONT #6

Closed mrvollger closed 4 years ago

mrvollger commented 4 years ago

Hi Sergey,

Do you have fastqs for the ultra long data and the regular ont data as two separate datasets, or a way to figure that out from the rel3 fastq.gz?

I am trying to build length distributions for the different datasets.

Thanks! Mitchell

skoren commented 4 years ago

I added IDs from each sequencing location for the rel3 data here:

https://s3.amazonaws.com/nanopore-human-wgs/chm13/nanopore/rel3/ids/nhgri.ids.gz
https://s3.amazonaws.com/nanopore-human-wgs/chm13/nanopore/rel3/ids/ucd.ids.gz
https://s3.amazonaws.com/nanopore-human-wgs/chm13/nanopore/rel3/ids/unottingham.ids.gz
https://s3.amazonaws.com/nanopore-human-wgs/chm13/nanopore/rel3/ids/uwashington.ids.gz

Will add these to the readme in the next update.