Open nicodemus88 opened 11 months ago
Hi, any update? I am looking for the same TxDB and GRanges files for the T2T genome.
I also run into this, can someone please comment on this? I wonder whether it is related to the known issue with the gff3 file sometimes missing a "parent" entry
Hello, could you provide a few examples of how the TxDB and GRanges files are used? I'd like to compare those from hg38 annotations to see how they differ.
Hi, I encountered the same warning messages when creating the TxDb and GRanges objects, and I was following the example provided in this link: https://github.com/Bioconductor/GenomicFeatures/issues/65
Hi, I am having some trouble making a gene annotation object (TxDB or GRanges) for CHM13 from the GFF file. When making the TxDB object, I got the following warning message:
Is this normal? I also noticed that there are quite a lot of NAs in the table and was having difficulties converting it to a GRanges object.
I think the annotation would be very useful to everyone else, so would it be possible for your team to host a TxDB / GRanges object of the annotation here?
Thank you very much.