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marbl / CHM13

The complete sequence of a human genome
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pseudohomologous regions #86

Open ekg opened 1 year ago

ekg commented 1 year ago

Would it be helpful to add the PHRs as annotation objects? We can share. CC @andreaguarracino

AndreaGuarracino commented 1 year ago

I attach them here: SupplementaryFile5.chrACRO_7-Dec-22_PHRs.bed.gz

Supplementary File 5. Pseudo-homologous regions identified in the acrocentric chromosomes of T2T-CHM13. The first three columns represent the T2T-CHM13 chromosome, the starting position, and the ending position of each pseudo-homologous region. Column 4 is the average Shannon Diversity Index. Column 5 is the average number of contigs.

ekg commented 6 months ago

Bump.

arangrhie commented 6 months ago

Hi @ekg and @AndreaGuarracino , I am a bit behind with tracks for T2T-CHM13v2. In the meantime, it would be useful if you could provide a description using this template.

AndreaGuarracino commented 6 months ago

@arangrhie, I attach wig, bigWig, and the descriptive template:

SupplementaryFile5.chrACRO_7-Dec-22_PHRs.bw.gz SupplementaryFile5.chrACRO_7-Dec-22_PHRs.wig.gz Guarracino_trackDescriptionTmpl.html.gz