marbl / HG002-issues

HG002 human reference genome issue tracking and polishing
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rDNA replaced by N's at chr14_MATERNAL:3463000-8633000 #650

Open nhansen opened 10 months ago

nhansen commented 10 months ago

Have you confirmed that this issue hasn't already been reported?

Issue location in assembly (use format chromosome:start-end, e.g., chr13_MATERNAL:3740148-9625296)

chr14_MATERNAL:3463000-8633000

Description of the issue

The assembly has N's in place of accurate rDNA array sequence.

jzook commented 8 months ago

may want to exclude a bit more, since HiFi & ONT errors out to chr14_MATERNAL 8571856