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Issue location in assembly (use format chromosome:start-end, e.g., chr13_MATERNAL:3740148-9625296)
chr11_MATERNAL:31305332-31305733
Description of the issue
A stretch of roughly 350 bases of CT-microsatellite is being read inconsistently by different long-read platforms. In addition, large numbers of reads having CT-microsatellites are possibly being misaligned to the region (note the very high coverage which is caused by clipped reads supporting only the CT region, but not the flanks.
Have you confirmed that this issue hasn't already been reported?
Issue location in assembly (use format chromosome:start-end, e.g., chr13_MATERNAL:3740148-9625296)
chr11_MATERNAL:31305332-31305733
Description of the issue
A stretch of roughly 350 bases of CT-microsatellite is being read inconsistently by different long-read platforms. In addition, large numbers of reads having CT-microsatellites are possibly being misaligned to the region (note the very high coverage which is caused by clipped reads supporting only the CT region, but not the flanks.