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marbl / HG002-issues

HG002 human reference genome issue tracking and polishing
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Issue: chr5_PATERNAL:47422349-47422811 #81

Closed nhansen closed 11 months ago

nhansen commented 1 year ago

Assembly Region

chr5_PATERNAL:47422349-47422811

Assembly Version

v0.7

hifi_evidence subregions

47422349-47422811 (Low)

seryrzu commented 1 year ago

Lower hifi coverage, but doesn't seem to be indicating any misasemblies. ONT simplex reports a lot of issues as typical that are not supported by HiFi or ONT duplex (not sure if that's basecalling issues or mismappings due to lower quality of reads).

chr5_PATERNAL-47,376,171-47,468,989