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marbl / Krona

Interactively explore metagenomes and more from a web browser.
https://github.com/marbl/Krona/wiki
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display to strain level #19

Open zhangchipku opened 8 years ago

zhangchipku commented 8 years ago

Hi, I have some viruses mapped to strain level. While krona successfully grouped the taxID and displayed up to species level, I'm hoping to see the charts displayed in more detail. Can this be implemented? Thanks

ondovb commented 8 years ago

This can probably be fixed with -k. For some reason, some strains in the taxonomy are marked as 'no rank' rather than 'strain'.

zhangchipku commented 8 years ago

Thanks! That solves it. It's a little weird though. I have to put the -k option first in ktImportTaxonomy. If I put it last, it won't work.

ondovb commented 7 years ago

This sheds some light on the issue: https://www.ncbi.nlm.nih.gov/news/11-21-2013-strain-id-changes/

I'll address this in the next version.

zhangchipku commented 7 years ago

Thanks a lot!

Chi Zhang

On Thu, Feb 2, 2017 at 11:17 AM, ondovb notifications@github.com wrote:

This sheds some light on the issue: https://www.ncbi.nlm.nih.gov/news/11-21-2013-strain-id-changes/

I'll address this in the next version.

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