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marbl
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MashMap
A fast approximate aligner for long DNA sequences
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Where is the “dependency-free linux and OSX binaries”
#68
kuangzhuoran
opened
3 months ago
0
Can't find precompiled binaries
#67
JWDebler
opened
7 months ago
0
Enable prefix-grouping for one-to-one filtering
#66
bkille
closed
8 months ago
0
Mash distance?
#65
jianshu93
closed
9 months ago
3
Average kc over all segments in chain
#64
bkille
closed
9 months ago
0
Outputs lower than specific percent identity threshold
#63
steven-solar
closed
10 months ago
1
Make htslib optional
#62
bkille
closed
1 year ago
0
cmake doesn't look for htslib, so the build fails
#61
yurivict
closed
1 year ago
7
V3.1.0
#60
bkille
closed
1 year ago
0
Is MKL dependency missing on conda?
#59
skoren
opened
1 year ago
2
MashMap v3.0.6
#58
bkille
closed
1 year ago
0
bottom K sketch time complexity
#57
jianshu93
closed
1 year ago
15
mashmap-align very slow
#56
jianshu93
closed
1 year ago
3
v3.0.5
#55
bkille
closed
1 year ago
0
Compilation issues under Archlinux using cmake
#54
kbipinkumar
closed
1 year ago
1
Installation issue with cmake --build build
#53
JGriffin17
closed
8 months ago
3
Problem with linux binary distribution for mashmap 3
#52
Dmitry-Antipov
opened
1 year ago
0
Update INSTALL.txt
#51
will-gebbie
closed
1 year ago
0
Add mashmap -v to the CI
#50
bkille
closed
1 year ago
0
Minor interface updates
#49
bkille
closed
1 year ago
0
Minor fixes
#48
bkille
closed
1 year ago
0
Mashmap3 cleanup
#47
bkille
closed
1 year ago
0
Add git generator script and remove unused libraries
#46
bkille
closed
1 year ago
0
Add option to remove march=native
#45
bkille
closed
1 year ago
0
Turn off hg filter when filter=none
#44
bkille
closed
1 year ago
0
Mashmap3
#43
bkille
closed
1 year ago
0
WIP: MashMap3 merge
#42
bkille
closed
1 year ago
4
Impact of filtering options on genome alignment
#41
jdwinkler-lanzatech
closed
1 year ago
1
k-mer size
#40
TazinRahman1105050
closed
1 year ago
3
libgsl.so.25: cannot open shared object file
#39
wook2014
closed
1 year ago
3
Malformed line in output?
#38
cmdcolin
closed
2 years ago
4
Current bioconda recipe doesn't seem to work
#37
mjsteinbaugh
closed
2 years ago
1
about mashmap.out result
#36
zhoudreames
closed
2 years ago
5
output conversion to SAM/BAM file
#35
SAMtoBAM
closed
1 year ago
7
make sure the hash is different from the null key value
#34
AndreaGuarracino
closed
1 year ago
0
segmentation fault with mashmap compare when empty file is passed to `-r` parameter
#33
taylorreiter
opened
3 years ago
0
fixed dummy window indicator
#32
AndreaGuarracino
closed
3 years ago
1
mashmap does not give results if input sequences are too short
#31
b-brankovics
opened
3 years ago
1
Ordering output with reference sequences
#30
aaronphillips7493
opened
4 years ago
3
multithreaded PAF alignment
#29
ekg
closed
1 year ago
1
generateDotPlot gives incomplete plot in postscript output
#28
fernmoss
closed
3 years ago
8
Weird relationship between aligned segment length and read length
#27
gbdias
closed
4 years ago
2
Scaffolding
#26
francicco
opened
4 years ago
3
Typo in help for command "index"
#25
ms-gx
closed
4 years ago
1
All-against-all mappings
#24
iminkin
opened
4 years ago
1
Increased threshold for identity --pi generate more match dots
#23
Raina-M
closed
4 years ago
4
Filtering for finding duplications
#22
iminkin
closed
4 years ago
4
Segmentation fault (core dumped)
#21
jaclyn-taroni
opened
5 years ago
10
Save sketches for reuse
#20
snayfach
opened
5 years ago
1
Window and K-mer size
#19
HTaekOppa
opened
5 years ago
1
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