Closed chklovski closed 5 years ago
The file is assumed to be multi-fasta.
Are there any requirements? Blank line between different organisms or between contigs, sequence line length, anything else? Whenever I provide metacompass a multi-fasta file, it invariably crashes during the contig_build job with a segmentation fault exception, but runs fine if provided an individual genome .fasta.
Please provide the error and the headers of your muti and single fasta files.
Sorry! It was my fault. I had two contigs in the merged fasta with identical headers. Unique headers fixed the problem.
I'm trying to run metacompass, and it runs fine if I specify a single reference .fasta genome with -r, but cannot recognize multiple .fasta genomes, and crashes if I provide it with a .fasta file containing all the reference genomes in a single file. Is it possible to run MetaCompass with multiple .fasta reference genomes?