I'm using MetaCompass v2.0-beta. Example1 worked but example2 didn't. It ended up with
Error in job reference_selection while creating output files example2_output/reference_selection/mc.refseq.fna, example2_output/reference_selection/mc.refseq.ids.
MissingOutputException in line 64 of /home/mpg02/MMTM/yiming.shi/metacompass/snakemake/metacompass.py:
Missing files after 5 seconds:
example2_output/reference_selection/mc.refseq.ids
This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait.
Exiting because a job execution failed. Look above for error message
[Thu Sep 30 18:14:47 2021] Will exit after finishing currently running jobs.
[Thu Sep 30 18:14:47 2021] Exiting because a job execution failed. Look above for error message
Any idea how to fix the problem? Thanks in advance.
Hi,
I'm using MetaCompass v2.0-beta. Example1 worked but example2 didn't. It ended up with
Error in job reference_selection while creating output files example2_output/reference_selection/mc.refseq.fna, example2_output/reference_selection/mc.refseq.ids. MissingOutputException in line 64 of /home/mpg02/MMTM/yiming.shi/metacompass/snakemake/metacompass.py: Missing files after 5 seconds: example2_output/reference_selection/mc.refseq.ids This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait. Exiting because a job execution failed. Look above for error message [Thu Sep 30 18:14:47 2021] Will exit after finishing currently running jobs. [Thu Sep 30 18:14:47 2021] Exiting because a job execution failed. Look above for error message
Any idea how to fix the problem? Thanks in advance.