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marbl / MetaCompass

MetaCompass: Reference-guided Assembly of Metagenomes
https://github.com/marbl/MetaCompass/wiki
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Error in job reference_selection #21

Open AKBode opened 2 years ago

AKBode commented 2 years ago

Hi,

I'm using MetaCompass v2.0-beta. Example1 worked but example2 didn't. It ended up with

Error in job reference_selection while creating output files example2_output/reference_selection/mc.refseq.fna, example2_output/reference_selection/mc.refseq.ids. MissingOutputException in line 64 of /home/mpg02/MMTM/yiming.shi/metacompass/snakemake/metacompass.py: Missing files after 5 seconds: example2_output/reference_selection/mc.refseq.ids This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait. Exiting because a job execution failed. Look above for error message [Thu Sep 30 18:14:47 2021] Will exit after finishing currently running jobs. [Thu Sep 30 18:14:47 2021] Exiting because a job execution failed. Look above for error message

Any idea how to fix the problem? Thanks in advance.

camilagazolla commented 2 years ago

Got the same error here.

Does someone know how to fix this?

Thank you!

camilagazolla commented 2 years ago

@AKBode try to check your mash version! I have updated mash to v.2.1 and it worked! :)