marbl / MetagenomeScope

Visualization tool for (meta)genome assembly graphs
https://marbl.github.io/MetagenomeScope/
GNU General Public License v3.0
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Pass extra GFA segment / link attributes (tags) to the visualization #238

Open fedarko opened 1 year ago

fedarko commented 1 year ago

23 describes doing this for depth, but there are other optional fields worth thinking about (k-mer coverage, link "mapping quality," etc.) -- see https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md.

This is a similar (but probably easier) issue to #147. I guess the ideal way to handle this is detecting all optional fields of all segments / links (with the understanding that only some segments or links in a file may have information for a given field), and then just passing these on to the visualization.