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marbl / ModDotPlot

MIT License
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All vs All interactive plot #16

Open Adamtaranto opened 9 months ago

Adamtaranto commented 9 months ago

Is it possible to generate an All vs All dotplot with ModDotPlot?

When I run moddotplot -i Asm_A.fasta Asm_B.fasta --compare I'm just getting a single dotplot of contig_1 vs contig_2 from the first fasta file only.

alexsweeten commented 9 months ago

Hi Adam,

ModDotPlot's interactive mode only supports a maximum of two sequences at a time. By default it will select the first two.

Running moddotplot with --static will compare all combinations of input sequences.

Best, Alex

Adamtaranto commented 9 months ago

Hi Alex, thanks for clarifying. Would love to see All vs All as a feature in a future version :)

amakunin commented 1 month ago

Hi @alexsweeten - as an option, would you consider generating Cooler files for interactive visualisation in HiGlass?