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marbl / VALET

A pipeline for detecting mis-assemblies in metagenomic assemblies.
MIT License
14 stars 4 forks source link

use only a single thread for samtools sort #12

Open bernt-matthias opened 4 years ago

bernt-matthias commented 4 years ago

with -@ 16 I get samtools sort: couldn't allocate memory for bam_mem

also better on HPC systems where the resources need to be allocated precisely.

see also https://github.com/bioconda/bioconda-recipes/pull/23441