marbl / Winnowmap

Long read / genome alignment software
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not compiling on Mac OS #14

Closed mleysens closed 3 years ago

mleysens commented 3 years ago

I have latest GCC installed on the Mac. Any thoughts to resolution?

ari:Winnowmap maurice$ make -j8 /Library/Developer/CommandLineTools/usr/bin/make -e -C src c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable main.c -o main.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable kthread.c -o kthread.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable kalloc.c -o kalloc.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable misc.c -o misc.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable bseq.c -o bseq.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable sketch.c -o sketch.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable sdust.c -o sdust.o c++ -c -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11 -Wno-sign-compare -Wno-write-strings -Wno-unused-but-set-variable options.c -o options.o clangclangclang: : : clang: clang: clang: clang: clang: warningwarning: warning: : warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]

treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] warning: warningtreating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] clangclang: errorclangclang: : : errorunsupported option '-fopenmp'error: : unsupported option '-fopenmp'unsupported option '-fopenmp'

: error: unsupported option '-fopenmp' clang: error: unsupported option '-fopenmp' clang: error: unsupported option '-fopenmp' clang: error: unsupported option '-fopenmp' clang: error: unsupported option '-fopenmp' make[1]: [kthread.o] Error 1 make[1]: Waiting for unfinished jobs.... make[1]: [sketch.o] Error 1 make[1]: [kalloc.o] Error 1 make[1]: [sdust.o] Error 1 make[1]: [misc.o] Error 1 make[1]: [options.o] Error 1 make[1]: [bseq.o] Error 1 make[1]: [main.o] Error 1 make: [winnowmap] Error 2

cjain7 commented 3 years ago

Check #3

mleysens commented 3 years ago

see notes related to #3

thanks

cjain7 commented 3 years ago

Solved in #3