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marbl / Winnowmap

Long read / genome alignment software
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uniq kmer anchoring mapping #15

Closed zhoudreames closed 3 years ago

zhoudreames commented 3 years ago

In T2T chrX centromere article,they mapiing reads by using uniq kmer anchoring method.Do I still need to corrected centromere reads location by uniq kmer method if I use Winowmap2 ?

zhoudreames commented 3 years ago

@jmarshall @tseemann @lh3 @mcshane could you help me ? thank you~

cjain7 commented 3 years ago

@zhoudreames You can follow the commands mentioned in README. There is no preprocessing needed.