Open Musketeer-D opened 3 years ago
Could I use 'samtools view -h Winnowmap.bam | awk 'length($10) > 50000 || $1 ~ /^@/' | samtools view -bS - > 50k.bam' to get winnowmap2 BAM files filtered for read lengths greater than 50 kb?
Could I use 'samtools view -h Winnowmap.bam | awk 'length($10) > 50000 || $1 ~ /^@/' | samtools view -bS - > 50k.bam' to get winnowmap2 BAM files filtered for read lengths greater than 50 kb?