Is it the same as with minimap? Becuase this leads to segfaults in my case :
./winnowmap -W {repetitive_file} -w 10 -k 15 -t 50 -x map-pb-clr -H -d {index_file} {reference_file} -> for indexing
./winnowmap -W {repetitve_file} -w 10 -k 15 -t 50 -x map-pb-clr -H -a {index_file} {read_file} > align.sam -> for mapping
Is it the same as with minimap? Becuase this leads to segfaults in my case : ./winnowmap -W {repetitive_file} -w 10 -k 15 -t 50 -x map-pb-clr -H -d {index_file} {reference_file} -> for indexing ./winnowmap -W {repetitve_file} -w 10 -k 15 -t 50 -x map-pb-clr -H -a {index_file} {read_file} > align.sam -> for mapping