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marbl / canu

A single molecule sequence assembler for genomes large and small.
http://canu.readthedocs.io/
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No untigs.fasta #1853

Closed lenhoe closed 3 years ago

lenhoe commented 3 years ago

Hi, I'm new to canu and using it to process nanopore datas. I ran the program with the default options (except that I specified the corMaxEvidenceErate at 0.15, since my target genome is GC reach and highly ripetitive). Anyway, in the "Output" section of canu tutorial is stated I should have as one of the output the file containing contigs split at alternate paths in the graph (untigs.fasta), but the only thing I can find with a slightly similar name is a folder (untigging). Is that normal? How can I fix it?

skoren commented 3 years ago

Ah, looks like the documentation didn't get re-built with that change, I've fixed it. The unitigs output has been deprecated as of canu 2.1 (see also #1786, #1826).