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parsnp ignores file called "1.fasta" #17

Open tallnuttcsiro opened 8 years ago

tallnuttcsiro commented 8 years ago

Interesting 'bug'. I had a sequence file called '1.fasta' and parsnp persistently ignored it from the alignment until I renamed it 1_seq.fasta.

parsnp -c -p 30 -d seqs/ -o26 -r ref.fasta -z 60 -o parsnp-o26

timp0 commented 7 years ago

Same bug - but for a file called 6.fasta when I have other files it does recognize called 1.fasta, 2.fasta, etc. A fix is isolate6.fasta