marbl / harvest

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parsnp with genbank file error #25

Closed sdewell closed 7 years ago

sdewell commented 7 years ago

I've downloaded a genbank file (full) with sequence. when running parsnp as follows:

parsnp -g ../HE681097.1.gb -d .. -p 4

i receive the following error:

-->Reading Genome (asm, fasta) files from .... |->[OK] -->Reading Genbank file(s) for reference (.gbk) ../HE681097.1.gb.. |->[OK] Traceback (most recent call last): File "", line 624, in NameError: name 'nameok' is not defined

any help appreciated - thanks!

idolawoye commented 5 years ago

Hello, I'm having the same issues as above. Were you able to fix it? Thanks