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parsnp not creating vcf file #41

Open hafizmtalha opened 6 years ago

hafizmtalha commented 6 years ago

I followed the given pipeline to create vcf file from parsnp to further use it for genotyphi.. Commands runs ok but not creating vcf file. any help ?

gavinmdouglas commented 3 years ago

For anyone else confused by the lack of a vcf file in the output - see this issue: https://github.com/marbl/harvest/issues/24

You need to use the related tool, harvesttools, to generate the VCF.