each input fasta file has more than one chromosome and plasmid?

marbl / harvest

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each input fasta file has more than one chromosome and plasmid? #46

Open limin321 opened 4 years ago

limin321 commented 4 years ago

I have dozens of bacterial genome with high assembled quality, and each genome has 2 chromosome and two or more plasmids. since parSNP only align core genes and call SNPs from core genes. How should I format my input file? Core genes of my bacteria are in two chromosomes. Thanks.