I am getting this error, even though bedtools and argparse are installed:
ERROR: Unable to locate a modulefile for 'bedtools'
Loading module 'R/4.2.1'
Loading required package: argparse
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘argparse’
Loading required package: ggplot2
Loading required package: scales
Error in ArgumentParser(description = "Make block N or NG plots. Applicable for scaffolds, contigs, and phased blocks.") :
could not find function "ArgumentParser"
Execution halted
Loading required package: argparse
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘argparse’
Loading required package: ggplot2
Loading required package: scales
Error in ArgumentParser(description = "Make block N or NG plots. Applicable for scaffolds, contigs, and phased blocks.") :
could not find function "ArgumentParser"
Execution halted
No .png plots are made; most of the other outputs are made successfully.
arangrhie
commented
1 week ago
I am getting this error, even though bedtools and argparse are installed:
ERROR: Unable to locate a modulefile for 'bedtools' Loading module 'R/4.2.1' Loading required package: argparse Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘argparse’ Loading required package: ggplot2 Loading required package: scales Error in ArgumentParser(description = "Make block N or NG plots. Applicable for scaffolds, contigs, and phased blocks.") : could not find function "ArgumentParser" Execution halted Loading required package: argparse Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘argparse’ Loading required package: ggplot2 Loading required package: scales Error in ArgumentParser(description = "Make block N or NG plots. Applicable for scaffolds, contigs, and phased blocks.") : could not find function "ArgumentParser" Execution halted
No .png plots are made; most of the other outputs are made successfully.