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marbl / merqury

k-mer based assembly evaluation
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Phase_hapmers.blob #55

Closed duhuipeng closed 2 years ago

duhuipeng commented 3 years ago

Dear author

The phase diagram I draw using merqury is as follows: image

image This is a phase diagram of my two different individuals But I found some problems at the head end (near 0), and I now want to take a separate look at the contig in these areas,I wonder what kind of text file there can know the contig corresponding to the area? Best

arangrhie commented 2 years ago

Hello @duhuipeng ,

As from this thread: https://github.com/marbl/merqury/issues/53

It's easy to calculate that from *.hapmers.count. Each columns are: <fasta> <scaffold/contig> <hap1> <hap2> <total>

This is the input file for this plot. and values are the numbers used for the X and Y coordinates. The circle size is roughly telling you the k-mer (size) you want, which is the <total>.