arangrhie
commented
2 years ago Hello @olechnwin , yes you are right, the .wig file replaces the .tdf file. I have updated the wiki doc. You could generate the .tdf if that's more convenient.
Visualization for the phased blocks are only available when merqury is run in trio mode with parental-specific kmers. And yes for the haplotype phasing as well.
Best, Arang
Hello,
I was following the steps in : https://github.com/marbl/merqury/wiki/2.-Overall-k-mer-evaluation but there is no tdf file to track bp error. I assumed the wig is replacing the tdf file but I'm not sure how to look at them. Is there a guideline on what they are for?
Also in Figure 5 of the paper, there are visualization for phased block. Is this file only available if I have trio data? In a related question, I assumed to assess haplotype phasing, I need to have trio data?
Thank you!