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marbl / merqury

k-mer based assembly evaluation
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bining Hi-C reads #74

Closed zhoudreames closed 1 year ago

zhoudreames commented 2 years ago

in your https://github.com/marbl/merqury/blob/master/trio/exclude_reads.sh， we used father or mother unique kmer to bin the child's reads, how to build the pat.meryl or mat.mery ? and whether the kmer database is required to filter ？ meryl-lookup -memory 2 -exclude -mers pat.meryl -sequence $read1 sequence2 $read2 -r2 mat.R2.fastq.gz | pigz -c > mat.R1.fastq.gz

arangrhie commented 2 years ago

The pat.meryl and mat.meryl are the pat.hapmer.meryl and mat.hapmer.meryl, generated with hapmers.sh.