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marbl / merqury

k-mer based assembly evaluation
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Can't interpret 'fastp/*.meryl': not a meryl command, option, or recognized input file. #86

Closed mictadlo closed 1 year ago

mictadlo commented 1 year ago

Hi,

I got Can't interpret 'fastp/*.meryl': not a meryl command, option, or recognized input file.

merqury> ls -hlatr fastp/
total 40K
lrwxrwxrwx 1 lorencm default   76 Nov  8 14:11 1740D-43-06_S0_L001_R1_001.fastp.fastq.gz -> /scratch/waterhouse_team/QLD/fastp/1740D-43-06_S0_L001_R1_001.fastp.fastq.gz
lrwxrwxrwx 1 lorencm default   76 Nov  8 14:11 1740D-43-06_S0_L001_R2_001.fastp.fastq.gz -> /scratch/waterhouse_team/QLD/fastp/1740D-43-06_S0_L001_R2_001.fastp.fastq.gz
drwxrwx--- 4 lorencm default 4.0K Nov  8 18:56 .
drwxrwx--- 2 lorencm default  12K Nov  8 20:28 1740D-43-06_S0_L001_R1_001.fastp.fastq.gz.meryl
drwxrwx--- 2 lorencm default  12K Nov  8 20:54 1740D-43-06_S0_L001_R2_001.fastp.fastq.gz.meryl
drwxrwx--- 3 lorencm default 4.0K Nov  9 08:25 ..

The command was meryl union-sum output ${1}.meryl fastp/*.meryl

What did I miss?

Thank you in advance