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marbl / merqury

k-mer based assembly evaluation
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R ERROR #89

Closed woodoo46 closed 9 months ago

woodoo46 commented 1 year ago

Hi,

I tried to run merqury pipeline, and at the end of the log file, I had this error message:

[1] "x_max: " [1] "y_max: 348694.5" [1] "## Line graph" Error in if (all(is.finite(continuous_range_coord)) && diff(continuous_range_coord) < : missing value where TRUE/FALSE needed Calls: spectra_cn_plot ... expand_limits_continuous -> expand_limits_continuous_trans In addition: Warning message: In max(dat[dat[, 1] != "read-total" & dat[, 1] != "read-only" & : no non-missing arguments to max; returning -Inf Execution halted

I am running pacbio hifi reads on pacbio hifi reads assembly (same data set). Or I did the wrong way?

Thanks.

George

arangrhie commented 1 year ago

Hi George,

Seems like an error occurred upstream. Could you check the log file?

Thanks, Arang

arangrhie commented 9 months ago

Closing this for now. Feel free to re-open, @woodoo46