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marbl / meryl

A genomic k-mer counter (and sequence utility) with nice features.
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Is this output correct? #48

Closed syresbr closed 5 months ago

syresbr commented 5 months ago

Hey, thanks for your work. I'm kinda lost. I'm using meryl to k-mers from my reads on a cluster and I'm not sure if it's correct, because it gave an log entry that only occurs when there is an error, but the log ends this way: image It does seems that it work, but the output is this: image And that doesn't seems right, it should be all in binary? Or should it give me another file that I can read?. But I'm not sure and would like some help. This is the script used: image Soooo, it's that? What am I seeing?

Thanks for your attention.

arangrhie commented 5 months ago

bar.meryl is a folder, and is a meryl db. You could get some statistics with meryl statistics bar.meryl | head or histograms with meryl histogram bar.meryl > bar.hist.

syresbr commented 5 months ago

Ohhhh, I get it now. Thanks a lot.