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marbl / metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS
http://marbl.github.io/metAMOS
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minor syntax error in Test/test_phmmer.sh #106

Closed chrisdag closed 10 years ago

chrisdag commented 10 years ago

initpipeline and runpipeline have a difference in the directory name used for the '-d' argument ("test_phmmmer" vs "test_phmmer"

../initPipeline -l flx -f -m carsonella_pe_filt.fna -d test_phmmmer -i 3000:4000 
../runPipeline -r -v -c phmmer -p 8 -a soap -d test_phmmer -k 55 -t -f Preprocess,Assemble,Annotate,Postprocess -z phylum
skoren commented 10 years ago

Typo fixed.