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marbl / metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS
http://marbl.github.io/metAMOS
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Installtion check eror #226

Closed guliseedol closed 8 years ago

guliseedol commented 9 years ago

Hi,

I am getting this error: ~/install/metAMOS-1.5rc3/Test$ ./run_pipeline_test.sh ./run_pipeline_test.sh: line 2: ../initPipeline: No such file or directory ./run_pipeline_test.sh: line 3: ../runPipeline: No such file or directory

Though iMetaAMOS has supposedly installed properly.

Thanks in advance.

skoren commented 9 years ago

It appears part of the installation did not finish. Do you have the output of running python INSTALL.py on your system?

guliseedol commented 9 years ago

mv: cannot move ./Utilities/python/matplotlib-1.1.0' to./Utilities/python/matplotlib/matplotlib-1.1.0': File exists Traceback (most recent call last): File "INSTALL.py", line 529, in if int(version) > 1: ValueError: invalid literal for int() with base 10: ''

guliseedol commented 9 years ago

only last part of course.

skoren commented 9 years ago

The installation aborted at the check for Jellyfish version to install Kraken. This is similar to issue #208. I would try the workaround suggested in that ticket or checking if your version of INSTALL.py has the bug or if it was fixed.

skoren commented 8 years ago

Closing inactivity