marbl / metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS
http://marbl.github.io/metAMOS
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IDBA-UD multiple libraries #231

Open shaman-narayanasamy opened 9 years ago

shaman-narayanasamy commented 9 years ago

Dear authors,

IDBA-UD within metAmos doesn't seem to use multiple libraries when running the assembly.

In the command log:

idba_ud --out idba-ud.31.asm --num_threads 8  --read /home/snarayanasamy/Work/metAmosAnalysis/D36_metAmos-IDBAUD/Preprocess/out/lib1.fasta --maxk 100 --pre_correction  --mink 21

The preprocessing seems to have gone well, and both libraries are present there.

For now, I will just concatenate both the libraries and perform the assembly again.

-Shaman-